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Select item 83571201.

Evolution and origin of sliding clamp in bacteria, archaea and eukarya

Sandesh Acharya, Amol Dahal, Hitesh Kumar Bhattarai

PLoS One. 2021; 16(8): e0241093. Published online 2021 Aug 11. doi: 10.1371/journal.pone.0241093

PMCID:: PMC8357120

Abstract Article PDF–2.6M

Select item 78303882.

CopR, a Global Regulator of Transcription to Maintain Copper Homeostasis in Pyrococcus furiosus

Felix Grünberger, Robert Reichelt, Ingrid Waege, Verena Ned, Korbinian Bronner, Marcell Kaljanac, Nina Weber, Zubeir El Ahmad, Lena Knauss, M. Gregor Madej, Christine Ziegler, Dina Grohmann, Winfried Hausner

Front Microbiol. 2020; 11: 613532. Published online 2021 Jan 11. doi: 10.3389/fmicb.2020.613532

PMCID:: PMC7830388

Abstract Article PDF–9.4M

Select item 66372433.

Intrinsic dynamic behavior of enzyme:substrate complexes govern the catalytic action of β-galactosidases across clan GH-A

Rajender Kumar, Bernard Henrissat, Pedro M. Coutinho

Sci Rep. 2019; 9: 10346. Published online 2019 Jul 17. doi: 10.1038/s41598-019-46589-8

PMCID:: PMC6637243

Abstract Article PDF–5.0M

Select item 52065364.

Conservation of coevolving protein interfaces bridges prokaryote–eukaryote homologies in the twilight zone

Juan Rodriguez-Rivas, Simone Marsili, David Juan, Alfonso Valencia

Proc Natl Acad Sci U S A. 2016 Dec 27; 113(52): 15018–15023. Published online 2016 Dec 13. doi: 10.1073/pnas.1611861114

PMCID:: PMC5206536

Abstract Article PDF–1.0M

Select item 47639695.

Circular RNAs in Eukaryotic Cells

Liang Chen, Chuan Huang, Xiaolin Wang, Ge Shan

Curr Genomics. 2015 Oct; 16(5): 312–318. Published online 2015 Oct. doi: 10.2174/1389202916666150707161554

PMCID:: PMC4763969

Abstract Article PDF–263K

Select item 46932376.

4-Hydroxy-nonenal—A Bioactive Lipid Peroxidation Product

Rudolf J. Schaur, Werner Siems, Nikolaus Bresgen, Peter M. Eckl

Biomolecules. 2015 Dec; 5(4): 2247–2337. Published online 2015 Sep 30. doi: 10.3390/biom5042247

PMCID:: PMC4693237

Abstract Article PDF–1.5M

Select item 43908877.

Phylogeny and Taxonomy of Archaea: A Comparison of the Whole-Genome-Based CVTree Approach with 16S rRNA Sequence Analysis

Guanghong Zuo, Zhao Xu, Bailin Hao

Life (Basel) 2015 Mar; 5(1): 949–968. Published online 2015 Mar 17. doi: 10.3390/life5010949

PMCID:: PMC4390887

Abstract Article PDF–1019K

Select item 43599748.

Oligomer-dependent and -independent chaperone activity of sHsps in different stressed conditions

Liang Liu, Jiyun Chen, Bo Yang, Yonghua Wang

FEBS Open Bio. 2015; 5: 155–162. Published online 2015 Mar 5. doi: 10.1016/j.fob.2015.02.006

PMCID:: PMC4359974

Abstract Article PDF–1.8M

Select item 33396329.

Proteomic Analysis of Sulfolobus solfataricus During Sulfolobus Turreted Icosahedral Virus Infection

Walid S. Maaty, Kyla Selvig, Stephanie Ryder, Pavel Tarlykov, Jonathan K. Hilmer, Joshua Heinemann, Joseph Steffens, Jamie C. Snyder, Alice C. Ortmann, Navid Movahed, Kevin Spicka, Lakshindra Chetia, Paul A. Grieco, Edward A. Dratz, Trevor Douglas, Mark J. Young, Brian Bothner

J Proteome Res. Author manuscript; available in PMC 2013 Feb 3.

Published in final edited form as: J Proteome Res. 2012 Feb 3; 11(2): 1420–1432. Published online 2012 Jan 24. doi: 10.1021/pr201087v

PMCID:: PMC3339632

Abstract Article PDF–2.3M

Select item 298164610.

Structures of 2-Acetylaminofluorene Modified DNA Revisited: Insight into Conformational Heterogeneity

Satyakam Patnaik, Bongsup P. Cho

Chem Res Toxicol. Author manuscript; available in PMC 2011 Nov 15.

Published in final edited form as: Chem Res Toxicol. 2010 Nov 15; 23(11): 1650–1652. Published online 2010 Oct 18. doi: 10.1021/tx100341u

PMCID:: PMC2981646

Abstract Article PDF–1.3M

Select item 295755911.

Identification of Critical Residues for the Tight Binding of Both Correct and Incorrect Nucleotides to Human DNA Polymerase λ

Jessica A. Brown, Lindsey R. Pack, Shanen M. Sherrer, Ajay K. Kshetry, Sean A. Newmister, Jason D. Fowler, John-Stephen Taylor, Zucai Suo

J Mol Biol. Author manuscript; available in PMC 2011 Nov 5.

Published in final edited form as: J Mol Biol. 2010 Nov 5; 403(4): 505–515. Published online 2010 Sep 21. doi: 10.1016/j.jmb.2010.09.014

PMCID:: PMC2957559

Abstract Article PDF–1.3M

Select item 294198412.

Pre-steady state kinetic studies of the fidelity of nucleotide incorporation by yeast DNA polymerase δ

Lynne M. Dieckman, Robert E. Johnson, Satya Prakash, M. Todd Washington

Biochemistry. Author manuscript; available in PMC 2011 Aug 31.

Published in final edited form as: Biochemistry. 2010 Aug 31; 49(34): 7344–7350. doi: 10.1021/bi100556m

PMCID:: PMC2941984

Abstract Article PDF–544K

Select item 290747813.

Kinetic Basis of Nucleotide Selection Employed by a Protein Template-Dependent DNA Polymerase

Jessica A. Brown, Jason D. Fowler, Zucai Suo

Biochemistry. Author manuscript; available in PMC 2011 Jul 6.

Published in final edited form as: Biochemistry. 2010 Jul 6; 49(26): 5504–5510. doi: 10.1021/bi100433x

PMCID:: PMC2907478

Abstract Article PDF–713K

Select item 283887614.

Carbon-dependent control of electron transfer and central carbon pathway genes for methane biosynthesis in the Archaean, Methanosarcina acetivorans strain C2A

Lars Rohlin, Robert P Gunsalus

BMC Microbiol. 2010; 10: 62. Published online 2010 Feb 23. doi: 10.1186/1471-2180-10-62

PMCID:: PMC2838876

Abstract Article PDF–1.6M

Select item 288415715.

CRISPR-Cas: an adaptive immunity system in prokaryotes

Eugene V Koonin, Kira S Makarova

F1000 Biol Rep. 2009; 1: 95. Published online 2009 Dec 9. doi: 10.3410/B1-95

PMCID:: PMC2884157

Abstract Article PDF–172K

Select item 286117016.

Effect of N-2-Acetylaminofluorene and 2-Aminofluorene Adducts on DNA Binding and Synthesis by Yeast DNA Polymerase η

Venkataramana Vooradi, Louis J. Romano

Biochemistry. Author manuscript; available in PMC 2010 Apr 29.

Published in final edited form as: Biochemistry. 2009 May 19; 48(19): 4209–4216. doi: 10.1021/bi9000722

PMCID:: PMC2861170

Abstract Article PDF–1.5M

Select item 275866017.

Crystal structures of two archaeal 8-oxoguanine DNA glycosylases of the Ogg2 family provide structural insight into guanine/8-oxoguanine distinction

Frédérick Faucher, Stéphanie Duclos, Viswanath Bandaru, Susan S. Wallace, Sylvie Doublié

Structure. Author manuscript; available in PMC 2010 May 13.

Published in final edited form as: Structure. 2009 May 13; 17(5): 703–712. doi: 10.1016/j.str.2009.03.007

PMCID:: PMC2758660

Abstract Article PDF–1.4M

Select item 261419618.

Minimum Contradiction Matrices in Whole Genome Phylogenies

Marc Thuillard

Evol Bioinform Online. 2008; 4: 237–247. Published online 2008 Jul 21. doi: 10.4137/ebo.s909

PMCID:: PMC2614196

Abstract Article PDF–498K

Select item 254636019.

Structure of the 1,N²-Etheno-2′-deoxyguanosine Adduct in Duplex DNA at pH 8.6

Ganesh Shanmugam, Angela K. Goodeneough, Ivan D. Kozekov, F. Peter Guengerich, Carmelo J. Rizzo, Michael P. Stone

Chem Res Toxicol. Author manuscript; available in PMC 2008 Nov 1.

Published in final edited form as: Chem Res Toxicol. 2007 Nov; 20(11): 1601–1611. Published online 2007 Oct 18. doi: 10.1021/tx7001788

PMCID:: PMC2546360

Abstract Article PDF–2.7M

Select item 204869720.

Molecular Architecture of Strictosidine Glucosidase: The Gateway to the Biosynthesis of the Monoterpenoid Indole Alkaloid Family

Leif Barleben, Santosh Panjikar, Martin Ruppert, Juergen Koepke, Joachim Stöckigt

Plant Cell. 2007 Sep; 19(9): 2886–2897. doi: 10.1105/tpc.106.045682

PMCID:: PMC2048697

Abstract Article PDF–1.1M

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