txid3085096[Organism:exp] - PMC

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Items: 19

Select item 106738911.

Genome wide analysis revealed conserved domains involved in the effector discrimination of bacterial type VI secretion system

Caihong Wang, Mingxing Chen, Yuhan Shao, Mengyuan Jiang, Quanjie Li, Lihong Chen, Yun Wu, Shan Cen, Nicholas R. Waterfield, Jian Yang, Guowei Yang

Commun Biol. 2023; 6: 1195. Published online 2023 Nov 24. doi: 10.1038/s42003-023-05580-w

PMCID:: PMC10673891

Abstract Article PDF–3.4M

Select item 105851162.

Identification of rare microbial colonizers of plastic materials incubated in a coral reef environment

Sebastian L. Singleton, Edward W. Davis, II, Holly K. Arnold, An Mei Y. Daniels, Susanne M. Brander, Rachel J. Parsons, Thomas J. Sharpton, Stephen J. Giovannoni

Front Microbiol. 2023; 14: 1259014. Published online 2023 Oct 5. doi: 10.3389/fmicb.2023.1259014

PMCID:: PMC10585116

Abstract Article PDF–3.3M

Select item 100737023.

The phylogeny and metabolic potentials of an n-alkane-degrading Venatorbacter bacterium isolated from deep-sea sediment of the Mariana Trench

Jiahua Wang, Yan Zhang, Ying Liu, Zhe Xie, Junwei Cao, Hongcai Zhang, Jie Liu, Tianqiang Bao, Congwen Sun, Bilin Liu, Yuli Wei, Jiasong Fang

Front Microbiol. 2023; 14: 1108651. Published online 2023 Mar 22. doi: 10.3389/fmicb.2023.1108651

PMCID:: PMC10073702

Abstract Article PDF–3.4M

Select item 97237534.

Presence of algal symbionts affects denitrifying bacterial communities in the sea anemone Aiptasia coral model

Nan Xiang, Nils Rädecker, Claudia Pogoreutz, Anny Cárdenas, Anders Meibom, Christian Wild, Astrid Gärdes, Christian R. Voolstra

ISME Commun. 2022; 2: 105. Published online 2022 Oct 28. doi: 10.1038/s43705-022-00190-9

PMCID:: PMC9723753

Abstract Article PDF–2.3M

Select item 97699875.

Understanding the Dynamic of POMS Infection and the Role of Microbiota Composition in the Survival of Pacific Oysters, Crassostrea gigas

Lizenn Delisle, Olivier Laroche, Zoë Hilton, Jean-François Burguin, Anne Rolton, Jolene Berry, Xavier Pochon, Pierre Boudry, Julien Vignier

Microbiol Spectr. 2022 Nov-Dec; 10(6): e01959-22. Published online 2022 Oct 31. doi: 10.1128/spectrum.01959-22

PMCID:: PMC9769987

Abstract Article PDF–2.9M

Select item 81399816.

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

Silvia G. Acinas, Pablo Sánchez, Guillem Salazar, Francisco M. Cornejo-Castillo, Marta Sebastián, Ramiro Logares, Marta Royo-Llonch, Lucas Paoli, Shinichi Sunagawa, Pascal Hingamp, Hiroyuki Ogata, Gipsi Lima-Mendez, Simon Roux, José M. González, Jesús M. Arrieta, Intikhab S. Alam, Allan Kamau, Chris Bowler, Jeroen Raes, Stéphane Pesant, Peer Bork, Susana Agustí, Takashi Gojobori, Dolors Vaqué, Matthew B. Sullivan, Carlos Pedrós-Alió, Ramon Massana, Carlos M. Duarte, Josep M. Gasol

Commun Biol. 2021; 4: 604. Published online 2021 May 21. doi: 10.1038/s42003-021-02112-2

PMCID:: PMC8139981

Abstract Article PDF–2.2M

Select item 79946057.

Metataxonomic Profiling of Native and Starter Microbiota During Ripening of Gouda Cheese Made With Listeria monocytogenes-Contaminated Unpasteurized Milk

Joelle K. Salazar, Lauren J. Gonsalves, Megan Fay, Padmini Ramachandran, Kristin M. Schill, Mary Lou Tortorello

Front Microbiol. 2021; 12: 642789. Published online 2021 Mar 12. doi: 10.3389/fmicb.2021.642789

PMCID:: PMC7994605

Abstract Article PDF–2.4M

Select item 79330148.

Trace Metal Contamination Impacts Predicted Functions More Than Structure of Marine Prokaryotic Biofilm Communities in an Anthropized Coastal Area

Clément Coclet, Cédric Garnier, Sébastien D’Onofrio, Gaël Durrieu, Emilie Pasero, Christophe Le Poupon, Dario Omanović, Jean-Ulrich Mullot, Benjamin Misson, Jean-François Briand

Front Microbiol. 2021; 12: 589948. Published online 2021 Feb 19. doi: 10.3389/fmicb.2021.589948

PMCID:: PMC7933014

Abstract Article PDF–2.3M

Select item 70587719.

Characterization of genes responsive to osmotic and oxidative stresses of the sugarcane bacterial pathogen Leifsonia xyli subsp. xyli

Raphael S. C. A. Faria, Mariana C. Cia, Claudia B. Monteiro-Vitorello, Ricardo A. Azevedo, Luis Eduardo A. Camargo

Braz J Microbiol. 2020 Mar; 51(1): 77–86. Published online 2019 Nov 22. doi: 10.1007/s42770-019-00163-6

PMCID:: PMC7058771

Abstract Article PDF–1.4M

Select item 1088691110.

Gut Fungal Microbiota Alterations in Pulmonary Arterial Hypertensive Rats

Yihang Chen, Liukun Meng, Wen Yuan, Zehan Gao, Xun Zhang, Boqia Xie, Jiawei Song, Jifeng Li, Jiuchang Zhong, Xiaoyan Liu

Biomedicines. 2024 Feb; 12(2): 298. Published online 2024 Jan 27. doi: 10.3390/biomedicines12020298

PMCID:: PMC10886911

Abstract Article PDF–12M

Select item 1040870211.

Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes

Maria Chuvochina, Aaron J Mussig, Pierre-Alain Chaumeil, Adam Skarshewski, Christian Rinke, Donovan H Parks, Philip Hugenholtz

FEMS Microbiol Lett. 2023; 370: fnad071. Published online 2023 Jul 21. doi: 10.1093/femsle/fnad071

PMCID:: PMC10408702

Abstract Article PDF–1.4M

Select item 959952112.

A Novel FadL Homolog, AltL, Mediates Transport of Long-Chain Alkanes and Fatty Acids in Acinetobacter venetianus RAG-1

Jia Liu, Shuai Chen, Bo Zhao, Guoqiang Li, Ting Ma

Appl Environ Microbiol. 2022 Oct; 88(20): e01294-22. Published online 2022 Sep 28. doi: 10.1128/aem.01294-22

PMCID:: PMC9599521

Abstract Article PDF–3.6M

Select item 900439813.

A c-di-GMP Signaling Cascade Controls Motility, Biofilm Formation, and Virulence in Burkholderia thailandensis

Zhuo Wang, Xiaorong Xie, Daohan Shang, Laigong Xie, Yueyue Hua, Li Song, Yantao Yang, Yao Wang, Xihui Shen, Lei Zhang

Appl Environ Microbiol. 2022 Apr; 88(7): e02529-21. Published online 2022 Mar 24. doi: 10.1128/aem.02529-21

PMCID:: PMC9004398

Abstract Article PDF–2.3M

Select item 894188914.

Microbial Consortiums of Putative Degraders of Low-Density Polyethylene-Associated Compounds in the Ocean

Maria Pinto, Zihao Zhao, Katja Klun, Eugen Libowitzky, Gerhard J. Herndl

mSystems. 2022 Mar-Apr; 7(2): e01415-21. Published online 2022 Mar 1. doi: 10.1128/msystems.01415-21

PMCID:: PMC8941889

Abstract Article PDF–5.9M

Select item 844508715.

Biogeography rather than substrate type determines bacterial colonization dynamics of marine plastics

Ashley K. Coons, Kathrin Busch, Mark Lenz, Ute Hentschel, Erik Borchert

PeerJ. 2021; 9: e12135. Published online 2021 Sep 13. doi: 10.7717/peerj.12135

PMCID:: PMC8445087

Abstract Article PDF–3.1M

Select item 826922816.

Integrated Multi-omics Investigations Reveal the Key Role of Synergistic Microbial Networks in Removing Plasticizer Di-(2-Ethylhexyl) Phthalate from Estuarine Sediments

Sean Ting-Shyang Wei, Yi-Lung Chen, Yu-Wei Wu, Tien-Yu Wu, Yi-Li Lai, Po-Hsiang Wang, Wael Ismail, Tzong-Huei Lee, Yin-Ru Chiang

mSystems. 2021 May-Jun; 6(3): e00358-21. Published online 2021 Jun 8. doi: 10.1128/mSystems.00358-21

PMCID:: PMC8269228

Abstract Article PDF–4.8M

Select item 794788017.

Concerning P450 Evolution: Structural Analyses Support Bacterial Origin of Sterol 14α-Demethylases

David C Lamb, Tatiana Y Hargrove, Bin Zhao, Zdzislaw Wawrzak, Jared V Goldstone, William David Nes, Steven L Kelly, Michael R Waterman, John J Stegeman, Galina I Lepesheva

Mol Biol Evol. 2021 Mar; 38(3): 952–967. Published online 2020 Oct 8. doi: 10.1093/molbev/msaa260

PMCID:: PMC7947880

Abstract Article PDF–1.1M

Select item 770213218.

Putative degraders of low‐density polyethylene‐derived compounds are ubiquitous members of plastic‐associated bacterial communities in the marine environment

Maria Pinto, Paula Polania Zenner, Teresa M. Langer, Jesse Harrison, Meinhard Simon, Marta M. Varela, Gerhard J. Herndl

Environ Microbiol. 2020 Nov; 22(11): 4779–4793. Published online 2020 Sep 28. doi: 10.1111/1462-2920.15232

PMCID:: PMC7702132

Abstract Article PDF–2.4M

Select item 730036519.

Initial Mapping of the New York City Wastewater Virome

K. Gulino, J. Rahman, M. Badri, J. Morton, R. Bonneau, E. Ghedin

mSystems. 2020 May-Jun; 5(3): e00876-19. Published online 2020 Jun 16. doi: 10.1128/mSystems.00876-19

PMCID:: PMC7300365

Abstract Article PDF–1.9M

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