RefSeq[Title] OR RefSeq[Abstract] - PMC

You searched 8+ million full text articles

Try this search in 34+ million citations and abstracts

PMC Full-Text Search Results

Items: 1 to 20 of 874

<< First< Prev

Page of 44

Next >Last >>

Select item 107679261.

RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes

Daniel H Haft, Azat Badretdin, George Coulouris, Michael DiCuccio, A Scott Durkin, Eric Jovenitti, Wenjun Li, Megdelawit Mersha, Kathleen R O’Neill, Joel Virothaisakun, Françoise Thibaud-Nissen

Nucleic Acids Res. 2024 Jan 5; 52(D1): D762–D769. Published online 2023 Nov 14. doi: 10.1093/nar/gkad988

PMCID:: PMC10767926

Abstract Article PDF–1.4M

Select item 105031982.

Lifting of the 1,000 wheat exome project SNPs from Triticum aestivum cv. Chinese Spring assembly RefSeq v1.0 to RefSeq v2.1

Akshaya Vasudevan, Sylvie Cloutier

BMC Res Notes. 2023; 16: 220. Published online 2023 Sep 14. doi: 10.1186/s13104-023-06496-8

PMCID:: PMC10503198

Abstract Article PDF–2.0M

Select item 101341973.

Revisiting and corrections to the annotated SRSF3 (SRp20) gene structure and RefSeq sequences from the human and mouse genomes

Lulu Yu, Vladimir Majerciak, Rong Jia, Zhi-Ming Zheng

Cell Insight. 2023 Apr; 2(2): 100089. Published online 2023 Feb 26. doi: 10.1016/j.cellin.2023.100089

PMCID:: PMC10134197

Abstract Article PDF–3.6M

Select item 37122164.

EcoGene-RefSeq: EcoGene tools applied to the RefSeq prokaryotic genomes

Jindan Zhou, Andrew J. Richardson, Kenneth E. Rudd

Bioinformatics. 2013 Aug 1; 29(15): 1917–1918. Published online 2013 Jun 4. doi: 10.1093/bioinformatics/btt302

PMCID:: PMC3712216

Abstract Article PDF–113K

Select item 77790085.

RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation

Wenjun Li, Kathleen R O’Neill, Daniel H Haft, Michael DiCuccio, Vyacheslav Chetvernin, Azat Badretdin, George Coulouris, Farideh Chitsaz, Myra K Derbyshire, A Scott Durkin, Noreen R Gonzales, Marc Gwadz, Christopher J Lanczycki, James S Song, Narmada Thanki, Jiyao Wang, Roxanne A Yamashita, Mingzhang Yang, Chanjuan Zheng, Aron Marchler-Bauer, Françoise Thibaud-Nissen

Nucleic Acids Res. 2021 Jan 8; 49(D1): D1020–D1028. Published online 2020 Dec 3. doi: 10.1093/nar/gkaa1105

PMCID:: PMC7779008

Abstract Article PDF–1.1M

Select item 57533316.

RefSeq: an update on prokaryotic genome annotation and curation

Daniel H Haft, Michael DiCuccio, Azat Badretdin, Vyacheslav Brover, Vyacheslav Chetvernin, Kathleen O’Neill, Wenjun Li, Farideh Chitsaz, Myra K Derbyshire, Noreen R Gonzales, Marc Gwadz, Fu Lu, Gabriele H Marchler, James S Song, Narmada Thanki, Roxanne A Yamashita, Chanjuan Zheng, Françoise Thibaud-Nissen, Lewis Y Geer, Aron Marchler-Bauer, Kim D Pruitt

Nucleic Acids Res. 2018 Jan 4; 46(Database issue): D851–D860. Published online 2017 Nov 3. doi: 10.1093/nar/gkx1068

PMCID:: PMC5753331

Abstract Article PDF–225K

Select item 297877.

RefSeq and LocusLink: NCBI gene-centered resources

Kim D. Pruitt, Donna R. Maglott

Nucleic Acids Res. 2001 Jan 1; 29(1): 137–140. doi: 10.1093/nar/29.1.137

PMCID:: PMC29787

Abstract Article PDF–108K

Select item 113683858.

refseqR: an R package for common computational operations with records on RefSeq collection

Jose V Die

Bioinform Adv. 2024; 4(1): vbae122. Published online 2024 Aug 21. doi: 10.1093/bioadv/vbae122

PMCID:: PMC11368385

Abstract Article PDF–380K

Select item 1023939.

NCBI’s LocusLink and RefSeq

Donna R. Maglott, Kenneth S. Katz, Hugues Sicotte, Kim D. Pruitt

Nucleic Acids Res. 2000 Jan 1; 28(1): 126–128. doi: 10.1093/nar/28.1.126

PMCID:: PMC102393

Abstract Article PDF–77K

Select item 53997910.

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

Kim D. Pruitt, Tatiana Tatusova, Donna R. Maglott

Nucleic Acids Res. 2005 Jan 1; 33(Database Issue): D501–D504. Published online 2004 Dec 17. doi: 10.1093/nar/gki025

PMCID:: PMC539979

Abstract Article PDF–62K

Select item 171671811.

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

Kim D. Pruitt, Tatiana Tatusova, Donna R. Maglott

Nucleic Acids Res. 2007 Jan; 35(Database issue): D61–D65. Published online 2006 Nov 27. doi: 10.1093/nar/gkl842

PMCID:: PMC1716718

Abstract Article PDF–241K

Select item 324500812.

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

Kim D. Pruitt, Tatiana Tatusova, Garth R. Brown, Donna R. Maglott

Nucleic Acids Res. 2012 Jan; 40(Database issue): D130–D135. Published online 2011 Nov 24. doi: 10.1093/nar/gkr1079

PMCID:: PMC3245008

Abstract Article PDF–1.7M

Select item 334602113.

Automation of a primer design and evaluation pipeline for subsequent sequencing of the coding regions of all human Refseq genes

Daniel Lai, Donald R Love

Bioinformation. 2012; 8(8): 365–368. Published online 2012 Apr 30. doi: 10.6026/97320630008365

PMCID:: PMC3346021

Abstract Article PDF–313K

Select item 268658814.

PEDANT covers all complete RefSeq genomes

Mathias C. Walter, Thomas Rattei, Roland Arnold, Ulrich Güldener, Martin Münsterkötter, Karamfilka Nenova, Gabi Kastenmüller, Patrick Tischler, Andreas Wölling, Andreas Volz, Norbert Pongratz, Ralf Jost, Hans-Werner Mewes, Dmitrij Frishman

Nucleic Acids Res. 2009 Jan; 37(Database issue): D408–D411. Published online 2008 Oct 21. doi: 10.1093/nar/gkn749

PMCID:: PMC2686588

Abstract Article PDF–85K

Select item 450232315.

Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction

Adam Frankish, Barbara Uszczynska, Graham RS Ritchie, Jose M Gonzalez, Dmitri Pervouchine, Robert Petryszak, Jonathan M Mudge, Nuno Fonseca, Alvis Brazma, Roderic Guigo, Jennifer Harrow

BMC Genomics. 2015; 16(Suppl 8): S2. Published online 2015 Jun 18. doi: 10.1186/1471-2164-16-S8-S2

PMCID:: PMC4502323

Abstract Article PDF–1001K

Select item 388288916.

Comparison of RefSeq protein-coding regions in human and vertebrate genomes

Jessica H Fong, Terence D Murphy, Kim D Pruitt

BMC Genomics. 2013; 14: 654. Published online 2013 Sep 25. doi: 10.1186/1471-2164-14-654

PMCID:: PMC3882889

Abstract Article PDF–1.6M

Select item 874468417.

RefSeq Functional Elements as experimentally assayed nongenic reference standards and functional interactions in human and mouse

Catherine M. Farrell, Tamara Goldfarb, Sanjida H. Rangwala, Alexander Astashyn, Olga D. Ermolaeva, Vichet Hem, Kenneth S. Katz, Vamsi K. Kodali, Frank Ludwig, Craig L. Wallin, Kim D. Pruitt, Terence D. Murphy

Genome Res. 2022 Jan; 32(1): 175–188. doi: 10.1101/gr.275819.121