PMC Links for BioProject (Select 216102) - PMC

Select item 40159941.

snOPY: a small nucleolar RNA orthological gene database

Maki Yoshihama, Akihiro Nakao, Naoya Kenmochi

BMC Res Notes. 2013; 6: 426. Published online 2013 Oct 23. doi: 10.1186/1756-0500-6-426

PMCID:: PMC4015994

Select item 34314932.

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G. Knowles, Julien Lagarde, Lavanya Veeravalli, Xiaoan Ruan, Yijun Ruan, Timo Lassmann, Piero Carninci, James B. Brown, Leonard Lipovich, Jose M. Gonzalez, Mark Thomas, Carrie A. Davis, Ramin Shiekhattar, Thomas R. Gingeras, Tim J. Hubbard, Cedric Notredame, Jennifer Harrow, Roderic Guigó

Genome Res. 2012 Sep; 22(9): 1775–1789. doi: 10.1101/gr.132159.111

PMCID:: PMC3431493

Abstract Article PDF–3.0M

Select item 34314923.

GENCODE: The reference human genome annotation for The ENCODE Project

Jennifer Harrow, Adam Frankish, Jose M. Gonzalez, Electra Tapanari, Mark Diekhans, Felix Kokocinski, Bronwen L. Aken, Daniel Barrell, Amonida Zadissa, Stephen Searle, If Barnes, Alexandra Bignell, Veronika Boychenko, Toby Hunt, Mike Kay, Gaurab Mukherjee, Jeena Rajan, Gloria Despacio-Reyes, Gary Saunders, Charles Steward, Rachel Harte, Michael Lin, Cédric Howald, Andrea Tanzer, Thomas Derrien, Jacqueline Chrast, Nathalie Walters, Suganthi Balasubramanian, Baikang Pei, Michael Tress, Jose Manuel Rodriguez, Iakes Ezkurdia, Jeltje van Baren, Michael Brent, David Haussler, Manolis Kellis, Alfonso Valencia, Alexandre Reymond, Mark Gerstein, Roderic Guigó, Tim J. Hubbard

Genome Res. 2012 Sep; 22(9): 1760–1774. doi: 10.1101/gr.135350.111

PMCID:: PMC3431492

Abstract Article PDF–1.7M

Select item 30137144.

lncRNAdb: a reference database for long noncoding RNAs

Paulo P. Amaral, Michael B. Clark, Dennis K. Gascoigne, Marcel E. Dinger, John S. Mattick

Nucleic Acids Res. 2011 Jan; 39(Database issue): D146–D151. Published online 2010 Nov 25. doi: 10.1093/nar/gkq1138

PMCID:: PMC3013714

Abstract Article PDF–3.0M

Select item 30136555.

miRBase: integrating microRNA annotation and deep-sequencing data

Ana Kozomara, Sam Griffiths-Jones

Nucleic Acids Res. 2011 Jan; 39(Database issue): D152–D157. Published online 2010 Oct 30. doi: 10.1093/nar/gkq1027

PMCID:: PMC3013655

Abstract Article PDF–5.1M

Select item 26865196.

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

Patricia P. Chan, Todd M. Lowe

Nucleic Acids Res. 2009 Jan; 37(Database issue): D93–D97. Published online 2008 Nov 4. doi: 10.1093/nar/gkn787

PMCID:: PMC2686519

Abstract Article PDF–6.1M

Select item 13475047.

The tmRDB and SRPDB resources

Ebbe Sloth Andersen, Magnus Alm Rosenblad, Niels Larsen, Jesper Cairo Westergaard, Jody Burks, Iwona K. Wower, Jacek Wower, Jan Gorodkin, Tore Samuelsson, Christian Zwieb

Nucleic Acids Res. 2006 Jan 1; 34(Database issue): D163–D168. Published online 2005 Dec 28. doi: 10.1093/nar/gkj142

PMCID:: PMC1347504

Abstract Article PDF–129K

Select item 3088368.

The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts

Pulcherie Gueneau de Novoa, Kelly P. Williams

Nucleic Acids Res. 2004 Jan 1; 32(Database issue): D104–D108. doi: 10.1093/nar/gkh102

PMCID:: PMC308836

Abstract Article PDF–93K

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