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Select item 3951351.

TBP-associated factors interact with DNA and govern species specificity of RNA polymerase I transcription.

U Rudloff, D Eberhard, L Tora, H Stunnenberg, I Grummt

EMBO J. 1994 Jun 1; 13(11): 2611–2616. doi: 10.1002/j.1460-2075.1994.tb06551.x

PMCID:: PMC395135

Summary Page Browse PDF–1.6M

Select item 18528482.

Identification of novel functional TBP-binding sites and general factor repertoires

Sergey Denissov, Marc van Driel, Renate Voit, Maarten Hekkelman, Tim Hulsen, Nouria Hernandez, Ingrid Grummt, Ron Wehrens, Hendrik Stunnenberg

EMBO J. 2007 Feb 21; 26(4): 944–954. Published online 2007 Feb 1. doi: 10.1038/sj.emboj.7601550

PMCID:: PMC1852848

Abstract Article PDF–488K

Select item 860703.

Repression of RNA Polymerase I Transcription by the Tumor Suppressor p53

Weiguo Zhai, Lucio Comai

Mol Cell Biol. 2000 Aug; 20(16): 5930–5938. doi: 10.1128/mcb.20.16.5930-5938.2000

PMCID:: PMC86070

Abstract Article PDF–744K

Select item 28103774.

Nucleolar retention of a translational C/EBPα isoform stimulates rDNA transcription and cell size

Christine Müller, Anna Bremer, Sandra Schreiber, Sabrina Eichwald, Cornelis F Calkhoven

EMBO J. 2010 Mar 3; 29(5): 897–909. Published online 2010 Jan 14. doi: 10.1038/emboj.2009.404

PMCID:: PMC2810377

Abstract Article PDF–1.3M

Select item 18293715.

A novel TBP-associated factor of SL1 functions in RNA polymerase I transcription

Julia J Gorski, Shalini Pathak, Kostya Panov, Taciana Kasciukovic, Tanya Panova, Jackie Russell, Joost C B M Zomerdijk

EMBO J. 2007 Mar 21; 26(6): 1560–1568. Published online 2007 Feb 22. doi: 10.1038/sj.emboj.7601601

PMCID:: PMC1829371

Abstract Article PDF–238K

Select item 1455196.

hRRN3 is essential in the SL1-mediated recruitment of RNA Polymerase I to rRNA gene promoters

Gail Miller, Kostya I. Panov, J.Karsten Friedrich, Laura Trinkle-Mulcahy, Angus I. Lamond, Joost C.B.M. Zomerdijk

EMBO J. 2001 Mar 15; 20(6): 1373–1382. doi: 10.1093/emboj/20.6.1373

PMCID:: PMC145519

Abstract Article PDF–295K

Select item 199857.

Cloning of murine RNA polymerase I-specific TAF factors: Conserved interactions between the subunits of the species-specific transcription initiation factor TIF-IB/SL1

Jutta Heix, Joost C. B. M. Zomerdijk, Ali Ravanpay, Robert Tjian, Ingrid Grummt

Proc Natl Acad Sci U S A. 1997 Mar 4; 94(5): 1733–1738. doi: 10.1073/pnas.94.5.1733

PMCID:: PMC19985

Abstract Article PDF–514K

Select item 1455248.

Acetylation of TAF_I68, a subunit of TIF-IB/SL1, activates RNA polymerase I transcription

Viola Muth, Sophie Nadaud, Ingrid Grummt, Renate Voit

EMBO J. 2001 Mar 15; 20(6): 1353–1362. doi: 10.1093/emboj/20.6.1353

PMCID:: PMC145524

Abstract Article PDF–271K

Select item 4342569.

Multiple Protein-Protein Interactions by RNA Polymerase I-Associated Factor PAF49 and Role of PAF49 in rRNA Transcription

Kazuo Yamamoto, Mika Yamamoto, Ken-ichi Hanada, Yasuhisa Nogi, Toshifumi Matsuyama, Masami Muramatsu

Mol Cell Biol. 2004 Jul; 24(14): 6338–6349. doi: 10.1128/MCB.24.14.6338-6349.2004

PMCID:: PMC434256

Abstract Article PDF–464K

Select item 130760310.

Multiple interactions between RNA polymerase I, TIF-IA and TAF_I subunits regulate preinitiation complex assembly at the ribosomal gene promoter

Xuejun Yuan, Jian Zhao, Hanswalter Zentgraf, Urs Hoffmann-Rohrer, Ingrid Grummt

EMBO Rep. 2002 Nov; 3(11): 1082–1087. doi: 10.1093/embo-reports/kvf212

PMCID:: PMC1307603

Abstract Article PDF–284K

Select item 642645511.

Mapping the genetic landscape of human cells

Max A. Horlbeck, Albert Xu, Min Wang, Neal K. Bennett, Chong Y. Park, Derek Bogdanoff, Britt Adamson, Eric D. Chow, Martin Kampmann, Tim R. Peterson, Ken Nakamura, Michael A. Fischbach, Jonathan S. Weissman, Luke A. Gilbert

Cell. Author manuscript; available in PMC 2019 Aug 9.

Published in final edited form as: Cell. 2018 Aug 9; 174(4): 953–967.e22. Published online 2018 Jul 19. doi: 10.1016/j.cell.2018.06.010

PMCID:: PMC6426455

Abstract Article PDF–3.6M

Select item 956995512.

A Degradation Motif in STAU1 Defines a Novel Family of Proteins Involved in Inflammation

Yulemi Gonzalez Quesada, Luc DesGroseillers

Int J Mol Sci. 2022 Oct; 23(19): 11588. Published online 2022 Sep 30. doi: 10.3390/ijms231911588

PMCID:: PMC9569955

Abstract Article PDF–2.1M

Select item 563060013.

Mammalian APE1 controls miRNA processing and its interactome is linked to cancer RNA metabolism

Giulia Antoniali, Fabrizio Serra, Lisa Lirussi, Mikiei Tanaka, Chiara D’Ambrosio, Shiheng Zhang, Slobodanka Radovic, Emiliano Dalla, Yari Ciani, Andrea Scaloni, Mengxia Li, Silvano Piazza, Gianluca Tell

Nat Commun. 2017; 8: 797. Published online 2017 Oct 6. doi: 10.1038/s41467-017-00842-8

PMCID:: PMC5630600

Abstract Article PDF–2.3M

Select item 271642214.

Defining the Human Deubiquitinating Enzyme Interaction Landscape

Mathew E. Sowa, Eric J. Bennett, Steven P. Gygi, J. Wade Harper

Cell. Author manuscript; available in PMC 2010 Jul 23.

Published in final edited form as: Cell. 2009 Jul 23; 138(2): 389–403. Published online 2009 Jul 16. doi: 10.1016/j.cell.2009.04.042

PMCID:: PMC2716422

Abstract Article PDF–6.1M

Select item 1015161515.

Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein–protein interactions in the human cell

Tara K. Bartolec, Xabier Vázquez-Campos, Alexander Norman, Clement Luong, Marcus Johnson, Richard J. Payne, Marc R. Wilkins, Joel P. Mackay, Jason K. K. Low

Proc Natl Acad Sci U S A. 2023 Apr 25; 120(17): e2219418120. Published online 2023 Apr 18. doi: 10.1073/pnas.2219418120

PMCID:: PMC10151615

Abstract Article PDF–2.9M

Select item 835296416.

Integrative oncogene-dependency mapping identifies RIT1 vulnerabilities and synergies in lung cancer

Athea Vichas, Amanda K. Riley, Naomi T. Nkinsi, Shriya Kamlapurkar, Phoebe C. R. Parrish, April Lo, Fujiko Duke, Jennifer Chen, Iris Fung, Jacqueline Watson, Matthew Rees, Austin M. Gabel, James D. Thomas, Robert K. Bradley, John K. Lee, Emily M. Hatch, Marina K. Baine, Natasha Rekhtman, Marc Ladanyi, Federica Piccioni, Alice H. Berger

Nat Commun. 2021; 12: 4789. Published online 2021 Aug 9. doi: 10.1038/s41467-021-24841-y

PMCID:: PMC8352964

Abstract Article PDF–4.5M

Select item 742732717.

Kinase Interaction Network Expands Functional and Disease Roles of Human Kinases

Marija Buljan, Rodolfo Ciuffa, Audrey van Drogen, Anton Vichalkovski, Martin Mehnert, George Rosenberger, Sohyon Lee, Markku Varjosalo, Lucia Espona Pernas, Vincent Spegg, Berend Snijder, Ruedi Aebersold, Matthias Gstaiger

Mol Cell. 2020 Aug 6; 79(3): 504–520.e9. doi: 10.1016/j.molcel.2020.07.001

PMCID:: PMC7427327

Abstract Article

Select item 426658818.

A proteome-scale map of the human interactome network

Thomas Rolland, Murat Taşan, Benoit Charloteaux, Samuel J. Pevzner, Quan Zhong, Nidhi Sahni, Song Yi, Irma Lemmens, Celia Fontanillo, Roberto Mosca, Atanas Kamburov, Susan D. Ghiassian, Xinping Yang, Lila Ghamsari, Dawit Balcha, Bridget E. Begg, Pascal Braun, Marc Brehme, Martin P. Broly, Anne-Ruxandra Carvunis, Dan Convery-Zupan, Roser Corominas, Jasmin Coulombe-Huntington, Elizabeth Dann, Matija Dreze, Amélie Dricot, Changyu Fan, Eric Franzosa, Fana Gebreab, Bryan J. Gutierrez, Madeleine F. Hardy, Mike Jin, Shuli Kang, Ruth Kiros, Guan Ning Lin, Katja Luck, Andrew MacWilliams, Jörg Menche, Ryan R. Murray, Alexandre Palagi, Matthew M. Poulin, Xavier Rambout, John Rasla, Patrick Reichert, Viviana Romero, Elien Ruyssinck, Julie M. Sahalie, Annemarie Scholz, Akash A. Shah, Amitabh Sharma, Yun Shen, Kerstin Spirohn, Stanley Tam, Alexander O. Tejeda, Shelly A. Wanamaker, Jean-Claude Twizere, Kerwin Vega, Jennifer Walsh, Michael E. Cusick, Yu Xia, Albert-László Barabási, Lilia M. Iakoucheva, Patrick Aloy, Javier De Las Rivas, Jan Tavernier, Michael A. Calderwood, David E. Hill, Tong Hao, Frederick P. Roth, Marc Vidal

Cell. Author manuscript; available in PMC 2015 Nov 20.

Published in final edited form as: Cell. 2014 Nov 20; 159(5): 1212–1226. doi: 10.1016/j.cell.2014.10.050

PMCID:: PMC4266588

Abstract Article PDF–3.1M

Select item 911973619.

OpenCell: proteome-scale endogenous tagging enables the cartography of human cellular organization

Nathan H. Cho, Keith C. Cheveralls, Andreas-David Brunner, Kibeom Kim, André C. Michaelis, Preethi Raghavan, Hirofumi Kobayashi, Laura Savy, Jason Y. Li, Hera Canaj, James Y.S. Kim, Edna M. Stewart, Christian Gnann, Frank McCarthy, Joana P. Cabrera, Rachel M. Brunetti, Bryant B. Chhun, Greg Dingle, Marco Y. Hein, Bo Huang, Shalin B. Mehta, Jonathan S. Weissman, Rafael Gómez-Sjöberg, Daniel N. Itzhak, Loic A. Royer, Matthias Mann, Manuel D. Leonetti

Science. Author manuscript; available in PMC 2022 Sep 11.

Published in final edited form as: Science. 2022 Mar 11; 375(6585): eabi6983. Published online 2022 Mar 11. doi: 10.1126/science.abi6983

PMCID:: PMC9119736

Abstract Article PDF–3.3M

Select item 461721120.

The BioPlex Network: A Systematic Exploration of the Human Interactome

Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2016 Jul 16.

Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043

PMCID:: PMC4617211

Abstract Article PDF–2.2M

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