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Items: 13

1.
Intrinsic dynamics of an extended hydrophobic core in the S. cerevisiae RNase III dsRBD contributes to recognition of specific RNA binding sites
Elon Hartman, Zhonghua Wang, Qi Zhang, Kevin Roy, Guillaume Chanfreau, Juli Feigon
J Mol Biol. Author manuscript; available in PMC 2014 Feb 8.
Published in final edited form as: J Mol Biol. 2013 Feb 8; 425(3): 546–562. Published online 2012 Nov 28. doi: 10.1016/j.jmb.2012.11.025
PMCID:
PMC3557707
AbstractArticlePDF–3.4M
2.
Structural insights into cis element recognition of non-polyadenylated RNAs by the Nab3-RRM
Bradley M. Lunde, Maximilian Hörner, Anton Meinhart
Nucleic Acids Res. 2011 Jan; 39(1): 337–346. Published online 2010 Aug 30. doi: 10.1093/nar/gkq751
PMCID:
PMC3017603
AbstractArticlePDF–6.2M
3.
Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III
Haihong Wu, Anthony Henras, Guillaume Chanfreau, Juli Feigon
Proc Natl Acad Sci U S A. 2004 Jun 1; 101(22): 8307–8312. Published online 2004 May 18. doi: 10.1073/pnas.0402627101
PMCID:
PMC420390
AbstractArticlePDF–693K
4.
Solution structure of conserved AGNN tetraloops: insights into Rnt1p RNA processing
Isabelle Lebars, Bruno Lamontagne, Satoko Yoshizawa, Sherif Abou Elela, Dominique Fourmy
EMBO J. 2001 Dec 17; 20(24): 7250–7258. doi: 10.1093/emboj/20.24.7250
PMCID:
PMC125334
AbstractArticlePDF–464K
5.
Identification of cis Elements Directing Termination of Yeast Nonpolyadenylated snoRNA Transcripts
Kristina L. Carroll, Dennis A. Pradhan, Josh A. Granek, Neil D. Clarke, Jeffry L. Corden
Mol Cell Biol. 2004 Jul; 24(14): 6241–6252. doi: 10.1128/MCB.24.14.6241-6252.2004
PMCID:
PMC434237
AbstractArticlePDF–501K
6.
The nucleosome DNA entry-exit site is important for transcription termination and prevention of pervasive transcription
A Elizabeth Hildreth, Mitchell A Ellison, Alex M Francette, Julia M Seraly, Lauren M Lotka, Karen M Arndt
eLife. 2020; 9: e57757. Published online 2020 Aug 26. doi: 10.7554/eLife.57757
PMCID:
PMC7449698
AbstractArticlePDF–6.6M
7.
Effects of the Paf1 Complex and Histone Modifications on snoRNA 3′-End Formation Reveal Broad and Locus-Specific Regulation
Brett N. Tomson, Elia M. Crisucci, Lawrence E. Heisler, Marinella Gebbia, Corey Nislow, Karen M. Arndt
Mol Cell Biol. 2013 Jan; 33(1): 170–182. doi: 10.1128/MCB.01233-12
PMCID:
PMC3536304
AbstractArticlePDF–1.5M
8.
Nuclear fate of yeast snoRNA is determined by co-transcriptional Rnt1 cleavage
Pawel Grzechnik, Sylwia A. Szczepaniak, Somdutta Dhir, Anna Pastucha, Hannah Parslow, Zaneta Matuszek, Hannah E. Mischo, Joanna Kufel, Nicholas J. Proudfoot
Nat Commun. 2018; 9: 1783. Published online 2018 May 3. doi: 10.1038/s41467-018-04094-y
PMCID:
PMC5934358
AbstractArticlePDF–3.7M
9.
A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae.
D A Samarsky, M J Fournier
Nucleic Acids Res. 1999 Jan 1; 27(1): 161–164. doi: 10.1093/nar/27.1.161
PMCID:
PMC148121
SummaryPDF–517K
10.
New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA
Dorota Piekna-Przybylska, Wayne A. Decatur, Maurille J. Fournier
RNA. 2007 Mar; 13(3): 305–312. doi: 10.1261/rna.373107
PMCID:
PMC1800513
AbstractArticlePDF–745K
11.
Transcriptome-Wide Binding Sites for Components of the Saccharomyces cerevisiae Non-Poly(A) Termination Pathway: Nrd1, Nab3, and Sen1
Tyler J. Creamer, Miranda M. Darby, Nuttara Jamonnak, Paul Schaughency, Haiping Hao, Sarah J. Wheelan, Jeffry L. Corden
PLoS Genet. 2011 Oct; 7(10): e1002329. Published online 2011 Oct 20. doi: 10.1371/journal.pgen.1002329
PMCID:
PMC3197677
AbstractArticlePDF–1.3M
12.
Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae
Mallory A Freeberg, Ting Han, James J Moresco, Andy Kong, Yu-Cheng Yang, Zhi John Lu, John R Yates, John K Kim
Genome Biol. 2013; 14(2): R13. Published online 2013 Feb 14. doi: 10.1186/gb-2013-14-2-r13
PMCID:
PMC4053964
AbstractArticlePDF–1.7M
13.
Target selection by natural and redesigned PUF proteins
Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens
Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112
PMCID:
PMC4703012
AbstractArticlePDF–1.3M

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