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Items: 1 to 20 of 53

1.
Zebularine upregulates expression of CYP genes through inhibition of DNMT1 and PKR in HepG2 cells
Kazuaki Nakamura, Kazuko Aizawa, Kyaw Htet Aung, Junji Yamauchi, Akito Tanoue
Sci Rep. 2017; 7: 41093. Published online 2017 Jan 23. doi: 10.1038/srep41093
PMCID:
PMC5253741
AbstractArticlePDF–1.6M
2.
A serine/arginine-rich nuclear matrix cyclophilin interacts with the C-terminal domain of RNA polymerase II.
J P Bourquin, I Stagljar, P Meier, P Moosmann, J Silke, T Baechi, O Georgiev, W Schaffner
Nucleic Acids Res. 1997 Jun 1; 25(11): 2055–2061. doi: 10.1093/nar/25.11.2055
PMCID:
PMC146702
SummaryPDF–166K
3.
BS69/ZMYND11 Reads and Connects Histone H3.3 Lysine 36 Trimethylation Decorated Chromatin to Regulated Pre-mRNA Processing
Rui Guo, Lijuan Zheng, Juw Won Park, Ruitu Lv, Hao Chen, Fangfang Jiao, Wenqi Xu, Shi-Rong Mu, Hong Wen, Jinsong Qiu, Zhentian Wang, Pengyuan Yang, Feizhen Wu, Jingyi Hui, Xiangdong Fu, Xiaobing Shi, Yujiang Geno Shi
Mol Cell. Author manuscript; available in PMC 2015 Oct 23.
Published in final edited form as: Mol Cell. 2014 Oct 23; 56(2): 298–310. Published online 2014 Sep 25. doi: 10.1016/j.molcel.2014.08.022
PMCID:
PMC4363072
AbstractArticlePDF–1.1M
4.
Structural and Biochemical Characterization of the Human Cyclophilin Family of Peptidyl-Prolyl Isomerases
Tara L. Davis, John R. Walker, Valérie Campagna-Slater, Patrick J. Finerty, Jr, Ragika Paramanathan, Galina Bernstein, Farrell MacKenzie, Wolfram Tempel, Hui Ouyang, Wen Hwa Lee, Elan Z. Eisenmesser, Sirano Dhe-Paganon
PLoS Biol. 2010 Jul; 8(7): e1000439. Published online 2010 Jul 27. doi: 10.1371/journal.pbio.1000439
PMCID:
PMC2911226
AbstractArticlePDF–3.6M
5.
The SARS-Coronavirus-Host Interactome: Identification of Cyclophilins as Target for Pan-Coronavirus Inhibitors
Susanne Pfefferle, Julia Schöpf, Manfred Kögl, Caroline C. Friedel, Marcel A. Müller, Javier Carbajo-Lozoya, Thorsten Stellberger, Ekatarina von Dall’Armi, Petra Herzog, Stefan Kallies, Daniela Niemeyer, Vanessa Ditt, Thomas Kuri, Roland Züst, Ksenia Pumpor, Rolf Hilgenfeld, Frank Schwarz, Ralf Zimmer, Imke Steffen, Friedemann Weber, Volker Thiel, Georg Herrler, Heinz-Jürgen Thiel, Christel Schwegmann-Weßels, Stefan Pöhlmann, Jürgen Haas, Christian Drosten, Albrecht von Brunn
PLoS Pathog. 2011 Oct; 7(10): e1002331. Published online 2011 Oct 27. doi: 10.1371/journal.ppat.1002331
PMCID:
PMC3203193
AbstractArticlePDF–1.7M
6.
Nucleolar Protein Trafficking in Response to HIV-1 Tat: Rewiring the Nucleolus
Mohamed Ali Jarboui, Carlo Bidoia, Elena Woods, Barbara Roe, Kieran Wynne, Giuliano Elia, William W. Hall, Virginie W. Gautier
PLoS One. 2012; 7(11): e48702. Published online 2012 Nov 15. doi: 10.1371/journal.pone.0048702
PMCID:
PMC3499507
AbstractArticlePDF–1.5M
7.
Stabilization of the methyl-CpG binding protein ZBTB38 by the deubiquitinase USP9X limits the occurrence and toxicity of oxidative stress in human cells
Benoit Miotto, Claire Marchal, Guillaume Adelmant, Nadège Guinot, Ping Xie, Jarrod A Marto, Lingqiang Zhang, Pierre-Antoine Defossez
Nucleic Acids Res. 2018 May 18; 46(9): 4392–4404. Published online 2018 Feb 27. doi: 10.1093/nar/gky149
PMCID:
PMC5961141
AbstractArticlePDF–2.1M
8.
Identification of Human Neuronal Protein Complexes Reveals Biochemical Activities and Convergent Mechanisms of Action in Autism Spectrum Disorders
Jingjing Li, Zhihai Ma, Minyi Shi, Ramy H. Malty, Hiroyuki Aoki, Zoran Minic, Sadhna Phanse, Ke Jin, Dennis P. Wall, Zhaolei Zhang, Alexander E. Urban, Joachim Hallmayer, Mohan Babu, Michael Snyder
Cell Syst. Author manuscript; available in PMC 2016 Nov 25.
Published in final edited form as: Cell Syst. 2015 Nov 25; 1(5): 361–374. doi: 10.1016/j.cels.2015.11.002
PMCID:
PMC4776331
AbstractArticlePDF–1.6M
9.
Comparison of an expanded ataxia interactome with patient medical records reveals a relationship between macular degeneration and ataxia
Juliette J. Kahle, Natali Gulbahce, Chad A. Shaw, Janghoo Lim, David E. Hill, Albert-László Barabási, Huda Y. Zoghbi
Hum Mol Genet. 2011 Feb 1; 20(3): 510–527. Published online 2010 Nov 15. doi: 10.1093/hmg/ddq496
PMCID:
PMC3016911
AbstractArticlePDF–703K
10.
Identification of phagocytosis regulators using magnetic genome-wide CRISPR screens
Michael S. Haney, Christopher J. Bohlen, David W Morgens, James A. Ousey, Amira A. Barkal, C. Kimberly Tsui, Braeden Ego, Roni Levin, Roarke Kamber, Hannah Collins, Andrew Tucker, Amy Li, Daan Vorselen, Lorenzo Labitigan, Emily Crane, Evan Boyle, Lihua Jiang, Joanne Chan, Esther Rincón, William J. Greenleaf, Billy Li, Michael P. Snyder, Irving L. Weissman, Julie A. Theriot, Sean R. Collins, Ben A. Barres, Michael C. Bassik
Nat Genet. Author manuscript; available in PMC 2019 Sep 3.
Published in final edited form as: Nat Genet. 2018 Dec; 50(12): 1716–1727. Published online 2018 Nov 5. doi: 10.1038/s41588-018-0254-1
PMCID:
PMC6719718
AbstractArticlePDF–1.3M
11.
Targeted Ubiquitination and Degradation of G-Protein-Coupled Receptor Kinase 5 by the DDB1-CUL4 Ubiquitin Ligase Complex
Ziyan Wu, Yuejun Chen, Tong Yang, Qinqin Gao, Man Yuan, Lan Ma
PLoS One. 2012; 7(8): e43997. Published online 2012 Aug 27. doi: 10.1371/journal.pone.0043997
PMCID:
PMC3428324
AbstractArticlePDF–2.0M
12.
Comparative analysis of virus-host interactomes with a mammalian high- throughput protein complementation assay based on Gaussia princeps luciferase
Grégory Neveu, Patricia Cassonnet, Pierre-Olivier Vidalain, Caroline Rolloy, José Mendoza, Louis Jones, Frédéric Tangy, Mandy Muller, Caroline Demeret, Lionel Tafforeau, Vincent Lotteau, Chantal Rabourdin-Combe, Gilles Travé, Amélie Dricot, David E. Hill, Marc Vidal, Michel Favre, Yves Jacob
Methods. Author manuscript; available in PMC 2013 Dec 1.
Published in final edited form as: Methods. 2012 Dec; 58(4): 349–359. Published online 2012 Aug 8. doi: 10.1016/j.ymeth.2012.07.029
PMCID:
PMC3546263
AbstractArticlePDF–4.3M
13.
A Comprehensive Resource of Interacting Protein Regions for Refining Human Transcription Factor Networks
Etsuko Miyamoto-Sato, Shigeo Fujimori, Masamichi Ishizaka, Naoya Hirai, Kazuyo Masuoka, Rintaro Saito, Yosuke Ozawa, Katsuya Hino, Takanori Washio, Masaru Tomita, Tatsuhiro Yamashita, Tomohiro Oshikubo, Hidetoshi Akasaka, Jun Sugiyama, Yasuo Matsumoto, Hiroshi Yanagawa
PLoS One. 2010; 5(2): e9289. Published online 2010 Feb 24. doi: 10.1371/journal.pone.0009289
PMCID:
PMC2827538
AbstractArticlePDF–676K
14.
Study of FOXO1-interacting proteins using TurboID-based proximity labeling technology
Yanting Su, Yuanyuan Guo, Jieyu Guo, Ting Zeng, Ting Wang, Wu Liu
BMC Genomics. 2023; 24: 146. Published online 2023 Mar 24. doi: 10.1186/s12864-023-09238-z
PMCID:
PMC10039511
AbstractArticlePDF–2.0M
15.
SETD1A Methyltransferase Is Physically and Functionally Linked to the DNA Damage Repair Protein RAD18
Manal Alsulami, Nayla Munawar, Eugene Dillon, Giorgio Oliviero, Kieran Wynne, Mona Alsolami, Catherine Moss, Peadar Ó Gaora, Fergal O'Meara, David Cotter, Gerard Cagney
Mol Cell Proteomics. 2019 Jul; 18(7): 1428–1436. Published online 2019 May 10. doi: 10.1074/mcp.RA119.001518
PMCID:
PMC6601208
AbstractArticlePDF–1.8M
16.
SNIP1 Recruits TET2 to Regulate c-MYC Target Genes and Cellular DNA Damage Response
Lei-Lei Chen, Huai-Peng Lin, Wen-Jie Zhou, Chen-Xi He, Zhi-Yong Zhang, Zhou-Li Cheng, Jun-Bin Song, Peng Liu, Xin-Yu Chen, Yu-Kun Xia, Xiu-Fei Chen, Ren-Qiang Sun, Jing-Ye Zhang, Yi-Ping Sun, Lei Song, Bing-Jie Liu, Rui-Kai Du, Chen Ding, Fei Lan, Sheng-Lin Huang, Feng Zhou, Suling Liu, Yue Xiong, Dan Ye, Kun-Liang Guan
Cell Rep. Author manuscript; available in PMC 2019 Jan 3.
Published in final edited form as: Cell Rep. 2018 Nov 6; 25(6): 1485–1500.e4. doi: 10.1016/j.celrep.2018.10.028
PMCID:
PMC6317994
AbstractArticlePDF–1.4M
17.
The multi-subunit GID/CTLH E3 ubiquitin ligase promotes cell proliferation and targets the transcription factor Hbp1 for degradation
Fabienne Lampert, Diana Stafa, Algera Goga, Martin Varis Soste, Samuel Gilberto, Natacha Olieric, Paola Picotti, Markus Stoffel, Matthias Peter
eLife. 2018; 7: e35528. Published online 2018 Jun 18. doi: 10.7554/eLife.35528
PMCID:
PMC6037477
AbstractArticlePDF–1.5M
18.
Insights into the ubiquitin-proteasome system of human embryonic stem cells
Isabel Saez, Seda Koyuncu, Ricardo Gutierrez-Garcia, Christoph Dieterich, David Vilchez
Sci Rep. 2018; 8: 4092. Published online 2018 Mar 6. doi: 10.1038/s41598-018-22384-9
PMCID:
PMC5840266
AbstractArticlePDF–2.9M
19.
Virus-Host Interactome and Proteomic Survey Reveal Potential Virulence Factors Influencing SARS-CoV-2 Pathogenesis
Jingjiao Li, Mingquan Guo, Xiaoxu Tian, Xin Wang, Xing Yang, Ping Wu, Chengrong Liu, Zixuan Xiao, Yafei Qu, Yue Yin, Chunxia Wang, Yucai Zhang, Zhaoqin Zhu, Zhenshan Liu, Chao Peng, Tongyu Zhu, Qiming Liang
Med (N Y) 2021 Jan 15; 2(1): 99–112.e7. Published online 2020 Jul 21. doi: 10.1016/j.medj.2020.07.002
PMCID:
PMC7373048
AbstractArticlePDF–3.8M
20.
TNRC6 proteins modulate hepatitis C virus replication by spatially regulating the binding of miR-122/Ago2 complexes to viral RNA
You Li, Li Wang, Efraín E Rivera-Serrano, Xian Chen, Stanley M Lemon
Nucleic Acids Res. 2019 Jul 9; 47(12): 6411–6424. Published online 2019 Apr 18. doi: 10.1093/nar/gkz278
PMCID:
PMC6614814
AbstractArticlePDF–4.9M

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