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Items: 1 to 20 of 27

1.
Screening human cell lines for viral infections applying RNA-Seq data analysis
Cord C. Uphoff, Claudia Pommerenke, Sabine A. Denkmann, Hans G. Drexler
PLoS One. 2019; 14(1): e0210404. Published online 2019 Jan 10. doi: 10.1371/journal.pone.0210404
PMCID:
PMC6328144
AbstractArticlePDF–1.5M
2.
Low Postseroconversion CD4+ T-cell Level Is Associated with Faster Disease Progression and Higher Viral Evolutionary Rate in HIV-2 Infection
Angelica A. Palm, Philippe Lemey, Marianne Jansson, Fredrik Månsson, Anders Kvist, Zsófia Szojka, Antonio Biague, Zacarias José da Silva, Sarah L. Rowland-Jones, Hans Norrgren, Joakim Esbjörnsson, Patrik Medstrand
mBio. 2019 Jan-Feb; 10(1): e01245-18. Published online 2019 Jan 8. doi: 10.1128/mBio.01245-18
PMCID:
PMC6325243
AbstractArticlePDF–932K
3.
Preadaptation of Simian Immunodeficiency Virus SIVsmm Facilitated Env-Mediated Counteraction of Human Tetherin by Human Immunodeficiency Virus Type 2
Elena Heusinger, Katja Deppe, Paola Sette, Christian Krapp, Dorota Kmiec, Silvia F. Kluge, Preston A. Marx, Cristian Apetrei, Frank Kirchhoff, Daniel Sauter
J Virol. 2018 Sep 15; 92(18): e00276-18. Prepublished online 2018 Jul 5. Published online 2018 Aug 29. doi: 10.1128/JVI.00276-18
PMCID:
PMC6146695
AbstractArticlePDF–1.3M
4.
Putative HIV and SIV G-Quadruplex Sequences in Coding and Noncoding Regions Can Form G-Quadruplexes
Petra Krafčíková, Erika Demkovičová, Andrea Halaganová, Viktor Víglaský
J Nucleic Acids. 2017; 2017: 6513720. Published online 2017 Dec 31. doi: 10.1155/2017/6513720
PMCID:
PMC5804116
AbstractArticlePDF–2.1M
5.
A Kolmogorov-Smirnov test for the molecular clock based on Bayesian ensembles of phylogenies
Fernando Antoneli, Fernando M. Passos, Luciano R. Lopes, Marcelo R. S. Briones
PLoS One. 2018; 13(1): e0190826. Published online 2018 Jan 4. doi: 10.1371/journal.pone.0190826
Correction in:
PLoS One. 2018; 13(2): e0193633.
PMCID:
PMC5754089
AbstractArticlePDF–2.4M
6.
Resistance of Major Histocompatibility Complex Class B (MHC-B) to Nef-Mediated Downregulation Relative to that of MHC-A Is Conserved among Primate Lentiviruses and Influences Antiviral T Cell Responses in HIV-1-Infected Individuals
Francis Mwimanzi, Mako Toyoda, Macdonald Mahiti, Jaclyn K. Mann, Jeffrey N. Martin, David Bangsberg, Mark A. Brockman, Philip Goulder, Frank Kirchhoff, Zabrina L. Brumme, Thumbi Ndung'u, Takamasa Ueno
J Virol. 2018 Jan 1; 92(1): e01409-17. Prepublished online 2017 Oct 18. Published online 2017 Dec 14. doi: 10.1128/JVI.01409-17
PMCID:
PMC5730772
AbstractArticlePDF–2.9M
7.
An information-based network approach for protein classification
Xiaogeng Wan, Xin Zhao, Stephen S. T. Yau
PLoS One. 2017; 12(3): e0174386. Published online 2017 Mar 28. doi: 10.1371/journal.pone.0174386
PMCID:
PMC5370107
AbstractArticlePDF–2.9M
8.
Distinct Particle Morphologies Revealed through Comparative Parallel Analyses of Retrovirus-Like Particles
Jessica L. Martin, Sheng Cao, Jose O. Maldonado, Wei Zhang, Louis M. Mansky
J Virol. 2016 Sep 15; 90(18): 8074–8084. Prepublished online 2016 Jun 29. Published online 2016 Aug 26. doi: 10.1128/JVI.00666-16
PMCID:
PMC5008088
AbstractArticlePDF–4.1M
9.
A Possible Mechanism of Zika Virus Associated Microcephaly: Imperative Role of Retinoic Acid Response Element (RARE) Consensus Sequence Repeats in the Viral Genome
Ashutosh Kumar, Himanshu N. Singh, Vikas Pareek, Khursheed Raza, Subrahamanyam Dantham, Pavan Kumar, Sankat Mochan, Muneeb A. Faiq
Front Hum Neurosci. 2016; 10: 403. Published online 2016 Aug 9. doi: 10.3389/fnhum.2016.00403
PMCID:
PMC4977292
AbstractArticlePDF–1.1M
10.
Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data
Gordon M. Daly, Richard M. Leggett, William Rowe, Samuel Stubbs, Maxim Wilkinson, Ricardo H. Ramirez-Gonzalez, Mario Caccamo, William Bernal, Jonathan L. Heeney
PLoS One. 2015; 10(6): e0129059. Published online 2015 Jun 22. doi: 10.1371/journal.pone.0129059
PMCID:
PMC4476701
AbstractArticlePDF–4.7M
11.
Monkeying around with HIV vaccines: using rhesus macaques to define ‘gatekeepers’ for clinical trials
Devon J. Shedlock, Guido Silvestri, David B. Weiner
Nat Rev Immunol. Author manuscript; available in PMC 2015 Feb 4.
Published in final edited form as: Nat Rev Immunol. 2009 Oct; 9(10): 717–728. doi: 10.1038/nri2636
PMCID:
PMC4317297
AbstractArticlePDF–752K
12.
A Genome-Wide Analysis of RNA Pseudoknots That Stimulate Efficient −1 Ribosomal Frameshifting or Readthrough in Animal Viruses
Xiaolan Huang, Qiang Cheng, Zhihua Du
Biomed Res Int. 2013; 2013: 984028. Published online 2013 Nov 4. doi: 10.1155/2013/984028
PMCID:
PMC3835772
AbstractArticlePDF–884K
13.
Complex Codon Usage Pattern and Compositional Features of Retroviruses
Sourav RoyChoudhury, Debaprasad Mukherjee
Comput Math Methods Med. 2013; 2013: 848123. Published online 2013 Oct 31. doi: 10.1155/2013/848123
PMCID:
PMC3833384
AbstractArticlePDF–913K
14.
ZASC1 Stimulates HIV-1 Transcription Elongation by Recruiting P-TEFb and TAT to the LTR Promoter
James W. Bruce, Rachel Reddington, Elizabeth Mathieu, Megan Bracken, John A. T. Young, Paul Ahlquist
PLoS Pathog. 2013 Oct; 9(10): e1003712. Published online 2013 Oct 24. doi: 10.1371/journal.ppat.1003712
PMCID:
PMC3812036
AbstractArticlePDF–3.9M
15.
Mechanism of HIV-1 RNA Dimerization in the Central Region of the Genome and Significance for Viral Evolution
Dorota Piekna-Przybylska, Gaurav Sharma, Robert A. Bambara
J Biol Chem. 2013 Aug 16; 288(33): 24140–24150. Published online 2013 Jul 9. doi: 10.1074/jbc.M113.477265
PMCID:
PMC3745356
AbstractArticlePDF–1.1M
16.
A Twin-Cysteine Motif in the V2 Region of gp120 Is Associated with SIV Envelope Trimer Stabilization
Christopher Bohl, Dane Bowder, Jesse Thompson, Levon Abrahamyan, Sandra Gonzalez-Ramirez, Youdong Mao, Joseph Sodroski, Charles Wood, Shi-hua Xiang
PLoS One. 2013; 8(7): e69406. Published online 2013 Jul 23. doi: 10.1371/journal.pone.0069406
PMCID:
PMC3720275
AbstractArticlePDF–1.4M
17.
Comparison of SIV and HIV-1 Genomic RNA Structures Reveals Impact of Sequence Evolution on Conserved and Non-Conserved Structural Motifs
Elizabeth Pollom, Kristen K. Dang, E. Lake Potter, Robert J. Gorelick, Christina L. Burch, Kevin M. Weeks, Ronald Swanstrom
PLoS Pathog. 2013 Apr; 9(4): e1003294. Published online 2013 Apr 4. doi: 10.1371/journal.ppat.1003294
PMCID:
PMC3616985
AbstractArticlePDF–3.6M
18.
Basic Residues in the Foamy Virus Gag Protein
Daniel Matthes, Tatiana Wiktorowicz, Juliane Zahn, Jochen Bodem, Nicole Stanke, Dirk Lindemann, Axel Rethwilm
J Virol. 2011 Apr; 85(8): 3986–3995. doi: 10.1128/JVI.01906-10
PMCID:
PMC3126134
AbstractArticlePDF–833K
19.
A Novel Construction of Genome Space with Biological Geometry
Chenglong Yu, Qian Liang, Changchuan Yin, Rong L. He, Stephen S.-T. Yau
DNA Res. 2010 Jun; 17(3): 155–168. Published online 2010 Apr 1. doi: 10.1093/dnares/dsq008
PMCID:
PMC2885272
AbstractArticlePDF–268K
20.
Human Immunodeficiency Virus Type 1 Isolates with the Reverse Transcriptase (RT) Mutation Q145M Retain Nucleoside and Nonnucleoside RT Inhibitor Susceptibility
Vici Varghese, Yumi Mitsuya, Rajin Shahriar, Michael H. Bachmann, W. Jeffrey Fessel, Ron M. Kagan, Robert W. Shafer
Antimicrob Agents Chemother. 2009 May; 53(5): 2196–2198. Published online 2009 Feb 17. doi: 10.1128/AAC.01593-08
PMCID:
PMC2681550
AbstractArticlePDF–42K

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