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Select item 61245761.

Mammalian embryo comparison identifies novel pluripotency genes associated with the naïve or primed state

Andreia S. Bernardo, Alice Jouneau, Hendrik Marks, Philip Kensche, Julianna Kobolak, Kristine Freude, Vanessa Hall, Anita Feher, Zsuzsanna Polgar, Chiara Sartori, Istvan Bock, Claire Louet, Tiago Faial, Hindrik H. D. Kerstens, Camille Bouissou, Gregory Parsonage, Kaveh Mashayekhi, James C. Smith, Giovanna Lazzari, Poul Hyttel, Hendrik G. Stunnenberg, Martijn Huynen, Roger A. Pedersen, Andras Dinnyes

Biol Open. 2018 Aug 15; 7(8): bio033282. Published online 2018 Jul 19. doi: 10.1242/bio.033282

PMCID:: PMC6124576

Abstract Article PDF–8.1M

Select item 60998872.

Heme ameliorates dextran sodium sulfate-induced colitis through providing intestinal macrophages with noninflammatory profiles

Hisako Kayama, Masako Kohyama, Daisuke Okuzaki, Daisuke Motooka, Soumik Barman, Ryu Okumura, Masato Muneta, Katsuaki Hoshino, Izumi Sasaki, Wataru Ise, Hiroshi Matsuno, Junichi Nishimura, Tomohiro Kurosaki, Shota Nakamura, Hisashi Arase, Tsuneyasu Kaisho, Kiyoshi Takeda

Proc Natl Acad Sci U S A. 2018 Aug 14; 115(33): 8418–8423. Published online 2018 Jul 30. doi: 10.1073/pnas.1808426115

PMCID:: PMC6099887

Abstract Article PDF–1.2M

Select item 55680743.

Articular cartilage endurance and resistance to osteoarthritic changes require transcription factor Erg

Yoichi Ohta, Takahiro Okabe, Colleen Larmour, Agnese Di Rocco, Marijke Maijenburg, Amanda Phillips, Nancy A. Speck, Shigeyuki Wakitani, Takashi Nakamura, Yoshihiko Yamada, Motomi Enomoto-Iwamoto, Maurizio Pacifici, Masahiro Iwamoto

Arthritis Rheumatol. Author manuscript; available in PMC 2017 Aug 23.

Published in final edited form as: Arthritis Rheumatol. 2015 Oct; 67(10): 2679–2690. doi: 10.1002/art.39243

PMCID:: PMC5568074

Abstract Article PDF–2.6M

Select item 50431294.

The macrophage contribution to stress erythropoiesis: when less is enough

Tatiana Ulyanova, Susan R. Phelps, Thalia Papayannopoulou

Blood. 2016 Sep 29; 128(13): 1756–1765. Prepublished online 2016 Aug 19. doi: 10.1182/blood-2016-05-714527

PMCID:: PMC5043129

Abstract Article

Select item 49830995.

Embryonic Stem Cell Culture Conditions Support Distinct States Associated with Different Developmental Stages and Potency

Javier Martin Gonzalez, Sophie M. Morgani, Robert A. Bone, Kasper Bonderup, Sahar Abelchian, Cord Brakebusch, Joshua M. Brickman

Stem Cell Reports. 2016 Aug 9; 7(2): 177–191. Published online 2016 Aug 9. doi: 10.1016/j.stemcr.2016.07.009

PMCID:: PMC4983099

Abstract Article PDF–2.8M

Select item 47499276.

RAG-mediated DNA double-strand breaks activate a cell type–specific checkpoint to inhibit pre–B cell receptor signals

Jeffrey J. Bednarski, Ruchi Pandey, Emily Schulte, Lynn S. White, Bo-Ruei Chen, Gabriel J. Sandoval, Masako Kohyama, Malay Haldar, Andrew Nickless, Amanda Trott, Genhong Cheng, Kenneth M. Murphy, Craig H. Bassing, Jacqueline E. Payton, Barry P. Sleckman

J Exp Med. 2016 Feb 8; 213(2): 209–223. doi: 10.1084/jem.20151048

PMCID:: PMC4749927

Abstract Article PDF–2.5M

Select item 44313507.

Trichostatin A specifically improves the aberrant expression of transcription factor genes in embryos produced by somatic cell nuclear transfer

Kimiko Inoue, Mami Oikawa, Satoshi Kamimura, Narumi Ogonuki, Toshinobu Nakamura, Toru Nakano, Kuniya Abe, Atsuo Ogura

Sci Rep. 2015; 5: 10127. Published online 2015 May 14. doi: 10.1038/srep10127

PMCID:: PMC4431350

Abstract Article PDF–1.2M

Select item 39280348.

Pre-B Cell Receptor Signaling Induces Immunoglobulin κ Locus Accessibility by Functional Redistribution of Enhancer-Mediated Chromatin Interactions

Ralph Stadhouders, Marjolein J. W. de Bruijn, Magdalena B. Rother, Saravanan Yuvaraj, Claudia Ribeiro de Almeida, Petros Kolovos, Menno C. Van Zelm, Wilfred van Ijcken, Frank Grosveld, Eric Soler, Rudi W. Hendriks

PLoS Biol. 2014 Feb; 12(2): e1001791. Published online 2014 Feb 18. doi: 10.1371/journal.pbio.1001791

PMCID:: PMC3928034

Abstract Article PDF–2.3M

Select item 38373409.

An extended transcriptional network for pluripotency of embryonic stem cells

Jonghwan Kim, Jianlin Chu, Xiaohua Shen, Jianlong Wang, Stuart H. Orkin

Cell. Author manuscript; available in PMC 2013 Nov 22.

Published in final edited form as: Cell. 2008 Mar 21; 132(6): 10.1016/j.cell.2008.02.039. doi: 10.1016/j.cell.2008.02.039

Correction in:: volume 133 on page 1290

PMCID:: PMC3837340

Abstract Article PDF–2.1M

Select item 340659910.

IFN Regulatory Factor 8 Restricts the Size of the Marginal Zone and Follicular B Cell Pools

Jianxun Feng, Hongsheng Wang, Dong-Mi Shin, Marek Masiuk, Chen-Feng Qi, Herbert C. Morse, III

J Immunol. Author manuscript; available in PMC 2012 Jul 27.

Published in final edited form as: J Immunol. 2011 Feb 1; 186(3): 1458–1466. Published online 2010 Dec 22. doi: 10.4049/jimmunol.1001950

PMCID:: PMC3406599

Abstract Article PDF–2.5M

Select item 338818911.

Mantle cell lymphoma-like lymphomas in c-myc-3'RR/p53^+/− mice and c-myc-3'RR/Cdk4^R24C mice: differential oncogenic mechanisms but similar cellular origin

Pauline Rouaud, Rémi Fiancette, Christelle Vincent-Fabert, Virginie Magnone, Michel Cogné, Pierre Dubus, Yves Denizot

Oncotarget. 2012 May; 3(5): 586–593. Published online 2012 May 15. doi: 10.18632/oncotarget.474

PMCID:: PMC3388189

Abstract Article PDF–704K

Select item 287731512.

Knockout of the Bcmo1 gene results in an inflammatory response in female lung, which is suppressed by dietary beta-carotene

Yvonne G. J. van Helden, Sandra G. Heil, Frederik J. van Schooten, Evelien Kramer, Susanne Hessel, Jaume Amengual, Joan Ribot, Katja Teerds, Adrian Wyss, Georg Lietz, M. Luisa Bonet, Johannes von Lintig, Roger W. L. Godschalk, Jaap Keijer

Cell Mol Life Sci. 2010 Jun; 67(12): 2039–2056. Published online 2010 Apr 6. doi: 10.1007/s00018-010-0341-7

PMCID:: PMC2877315

Abstract Article PDF–656K

Select item 274415313.

Krüppel-like Factor 4, a “Pluripotency Transcription Factor” Highly Expressed in Male Postmeiotic Germ Cells, Is Dispensable for Spermatogenesis in the Mouse

Maren Godmann, Isabella Gashaw, Jonathan P. Katz, Andras Nagy, Klaus H. Kaestner, Rüdiger Behr

Mech Dev. Author manuscript; available in PMC 2010 Aug 1.

Published in final edited form as: Mech Dev. 2009 Aug–Sep; 126(8-9): 650–664. Published online 2009 Jun 17. doi: 10.1016/j.mod.2009.06.1081

PMCID:: PMC2744153

Abstract Article PDF–3.7M

Select item 268675314.

Global expression profiling reveals regulation of CTGF/CCN2 during lactogenic differentiation

Weihan Wang, Cynthia Jose, Nicholas Kenney, Bethanie Morrison, Mary Lou Cutler

J Cell Commun Signal. 2009 Mar; 3(1): 43–55. Published online 2009 Apr 8. doi: 10.1007/s12079-009-0047-5

PMCID:: PMC2686753

Abstract Article PDF–364K

Select item 226588115.

Comparative transcriptional profiling of the lung reveals shared and distinct features of Streptococcus pneumoniae and influenza A virus infection

Simone Rosseau, Andreas Hocke, Hans Mollenkopf, Bernd Schmeck, Norbert Suttorp, Stefan H E Kaufmann, Jens Zerrahn

Immunology. 2007 Mar; 120(3): 380–391. doi: 10.1111/j.1365-2567.2006.02514.x

PMCID:: PMC2265881

Abstract Article PDF–734K

Select item 163759716.

A central regulatory role for eosinophils and the eotaxin/CCR3 axis in chronic experimental allergic airway inflammation

Patricia C. Fulkerson, Christine A. Fischetti, Melissa L. McBride, Lynn M. Hassman, Simon P. Hogan, Marc E. Rothenberg

Proc Natl Acad Sci U S A. 2006 Oct 31; 103(44): 16418–16423. Published online 2006 Oct 23. doi: 10.1073/pnas.0607863103

PMCID:: PMC1637597

Abstract Article PDF–683K

Select item 31099217.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098018.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 18662319.

GFScan: A Gene Family Search Tool at Genomic DNA Level

Zhenyu Xuan, W. Richard McCombie, Michael Q. Zhang

Genome Res. 2002 Jul; 12(7): 1142–1149. doi: 10.1101/gr.220102

PMCID:: PMC186623

Abstract Article PDF–171K

Select item 13924120.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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