PMC Links for GEO Profiles (Select 108498277) - PMC

Select item 81650301.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 55316112.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 40665233.

Probing nuclear pore complex architecture with proximity-dependent biotinylation

Dae In Kim, Birendra KC, Wenhong Zhu, Khatereh Motamedchaboki, Valérie Doye, Kyle J. Roux

Proc Natl Acad Sci U S A. 2014 Jun 17; 111(24): E2453–E2461. Published online 2014 Jun 3. doi: 10.1073/pnas.1406459111

PMCID:: PMC4066523

Abstract Article PDF–1.6M

Select item 37076544.

Dynamics of the Antigen-binding Grooves in CD1 Proteins: REVERSIBLE HYDROPHOBIC COLLAPSE IN THE LIPID-FREE STATE

Diana Garzón, Claudio Anselmi, Peter J. Bond, José D. Faraldo-Gómez

J Biol Chem. 2013 Jul 5; 288(27): 19528–19536. Published online 2013 May 15. doi: 10.1074/jbc.M113.470179

PMCID:: PMC3707654

Abstract Article PDF–2.6M

Select item 34389825.

Deciphering the Role of CD1e Protein in Mycobacterial Phosphatidyl-myo-inositol Mannosides (PIM) Processing for Presentation by CD1b to T Lymphocytes

Diane Cala-De Paepe, Emilie Layre, Gaëlle Giacometti, Luis F. Garcia-Alles, Lucia Mori, Daniel Hanau, Gennaro de Libero, Henri de la Salle, Germain Puzo, Martine Gilleron

J Biol Chem. 2012 Sep 7; 287(37): 31494–31502. Published online 2012 Jul 10. doi: 10.1074/jbc.M112.386300

PMCID:: PMC3438982

Abstract Article PDF–1.1M

Select item 34118356.

Lysosomal-Associated Transmembrane Protein 5 (LAPTM5) Is a Molecular Partner of CD1e

Catherine Angénieux, François Waharte, Alexandre Gidon, François Signorino-Gelo, Virginie Wurtz, Rim Hojeij, Fabienne Proamer, Christian Gachet, Alain Van Dorsselaer, Daniel Hanau, Jean Salamero, Henri de la Salle

PLoS One. 2012; 7(8): e42634. Published online 2012 Aug 3. doi: 10.1371/journal.pone.0042634

PMCID:: PMC3411835

Abstract Article PDF–4.4M

Select item 31780597.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 31615858.

Fine tuning by human CD1e of lipid-specific immune responses

Federica Facciotti, Marco Cavallari, Catherine Angénieux, Luis F. Garcia-Alles, François Signorino-Gelo, Lena Angman, Martine Gilleron, Jacques Prandi, Germain Puzo, Luigi Panza, Chengfeng Xia, Peng George Wang, Paolo Dellabona, Giulia Casorati, Steven A. Porcelli, Henri de la Salle, Lucia Mori, Gennaro De Libero

Proc Natl Acad Sci U S A. 2011 Aug 23; 108(34): 14228–14233. Published online 2011 Aug 15. doi: 10.1073/pnas.1108809108

PMCID:: PMC3161585

Abstract Article PDF–299K

Select item 31561859.

Crystal structure of human CD1e reveals a groove suited for lipid-exchange processes

Luis F. Garcia-Alles, Gaelle Giacometti, Cees Versluis, Laurent Maveyraud, Diane de Paepe, Julie Guiard, Samuel Tranier, Martine Gilleron, Jacques Prandi, Daniel Hanau, Albert J. R. Heck, Lucia Mori, Gennaro De Libero, Germain Puzo, Lionel Mourey, Henri de la Salle

Proc Natl Acad Sci U S A. 2011 Aug 9; 108(32): 13230–13235. Published online 2011 Jul 25. doi: 10.1073/pnas.1105627108

PMCID:: PMC3156185

Abstract Article PDF–1.2M

Select item 135612910.

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano

Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406