PMC Links for GEO Profiles (Select 108553743) - PMC

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Items: 18

Select item 95262561.

A standardized nomenclature for mammalian histone genes

Ruth L. Seal, Paul Denny, Elspeth A. Bruford, Anna K. Gribkova, David Landsman, William F. Marzluff, Monica McAndrews, Anna R. Panchenko, Alexey K. Shaytan, Paul B. Talbert

Epigenetics Chromatin. 2022; 15: 34. Published online 2022 Oct 1. doi: 10.1186/s13072-022-00467-2

PMCID:: PMC9526256

Abstract Article PDF–1.1M

Select item 90713842.

Multivalent DNA and nucleosome acidic patch interactions specify VRK1 mitotic localization and activity

Gabrielle R Budziszewski, Yani Zhao, Cathy J Spangler, Katarzyna M Kedziora, Michael R Williams, Dalal N Azzam, Aleksandra Skrajna, Yuka Koyama, Andrew P Cesmat, Holly C Simmons, Eyla C Arteaga, Joshua D Strauss, Dmitri Kireev, Robert K McGinty

Nucleic Acids Res. 2022 May 6; 50(8): 4355–4371. Published online 2022 Apr 7. doi: 10.1093/nar/gkac198

PMCID:: PMC9071384

Abstract Article PDF–8.7M

Select item 75438863.

SARS-CoV-2 Disrupts Splicing, Translation, and Protein Trafficking to Suppress Host Defenses

Abhik K. Banerjee, Mario R. Blanco, Emily A. Bruce, Drew D. Honson, Linlin M. Chen, Amy Chow, Prashant Bhat, Noah Ollikainen, Sofia A. Quinodoz, Colin Loney, Jasmine Thai, Zachary D. Miller, Aaron E. Lin, Madaline M. Schmidt, Douglas G. Stewart, Daniel Goldfarb, Giuditta De Lorenzo, Suzannah J. Rihn, Rebecca M. Voorhees, Jason W. Botten, Devdoot Majumdar, Mitchell Guttman

Cell. 2020 Nov 25; 183(5): 1325–1339.e21. doi: 10.1016/j.cell.2020.10.004

PMCID:: PMC7543886

Abstract Article

Select item 46853124.

The variant Polycomb Repressor Complex 1 component PCGF1 interacts with a pluripotency sub-network that includes DPPA4, a regulator of embryogenesis

Giorgio Oliviero, Nayla Munawar, Ariane Watson, Gundula Streubel, Gwendolyn Manning, Vivian Bardwell, Adrian P. Bracken, Gerard Cagney

Sci Rep. 2015; 5: 18388. Published online 2015 Dec 21. doi: 10.1038/srep18388

PMCID:: PMC4685312

Abstract Article PDF–1.5M

Select item 46479415.

hORFeome v3.1: A resource of human open reading frames representing over 10,000 human genes

Philippe Lamesch, Ning Li, Stuart Milstein, Changyu Fan, Tong Hao, Gabor Szabo, Zhenjun Hu, Kavitha Venkatesan, Graeme Bethel, Paul Martin, Jane Rogers, Stephanie Lawlor, Stuart McLaren, Amélie Dricot, Heather Borick, Michael E. Cusick, Jean Vandenhaute, Ian Dunham, David E. Hill, Marc Vidal

Genomics. 2007 Mar; 89(3): 307–315. doi: 10.1016/j.ygeno.2006.11.012

PMCID:: PMC4647941

Abstract Article

Select item 45873226.

Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage

Romain Drissi, Marie-Line Dubois, Mélanie Douziech, François-Michel Boisvert

Mol Cell Proteomics. 2015 Jul; 14(7): 2002–2013. Published online 2015 May 11. doi: 10.1074/mcp.M115.048991

PMCID:: PMC4587322

Abstract Article PDF–3.0M

Select item 42527667.

Structural insights into recognition of acetylated histone ligands by the BRPF1 bromodomain

Mulu Y. Lubula, Brian E. Eckenroth, Samuel Carlson, Amanda Poplawski, Maksymilian Chruszcz, Karen C. Glass

FEBS Lett. Author manuscript; available in PMC 2015 Nov 3.

Published in final edited form as: FEBS Lett. 2014 Nov 3; 588(21): 3844–3854. Published online 2014 Sep 30. doi: 10.1016/j.febslet.2014.09.028

PMCID:: PMC4252766

Abstract Article PDF–1.3M

Select item 37735058.

In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine

Simona Principe, E. Ellen Jones, Yunee Kim, Ankit Sinha, Julius O. Nyalwidhe, Jasmin Brooks, O. John Semmes, Dean A. Troyer, Raymond S. Lance, Thomas Kislinger, Richard R. Drake

Proteomics. Author manuscript; available in PMC 2014 May 1.

Published in final edited form as: Proteomics. 2013 May; 13(0): 1667–1671. Published online 2013 Apr 23. doi: 10.1002/pmic.201200561

PMCID:: PMC3773505

Abstract Article PDF–630K

Select item 32853089.

Macro Histone H2A1.2 (MacroH2A1) Protein Suppresses Mitotic Kinase VRK1 during Interphase

Wanil Kim, Goutam Chakraborty, Sangjune Kim, Joon Shin, Choon-Ho Park, Min-Woo Jeong, Nagakumar Bharatham, Ho Sup Yoon, Kyong-Tai Kim

J Biol Chem. 2012 Feb 17; 287(8): 5278–5289. Published online 2011 Dec 22. doi: 10.1074/jbc.M111.281709

PMCID:: PMC3285308

Abstract Article PDF–2.9M

Select item 317805910.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 303367211.

Genome-wide YFP Fluorescence Complementation Screen Identifies New Regulators for Telomere Signaling in Human Cells

Ok-Hee Lee, Hyeung Kim, Quanyuan He, Hwa Jin Baek, Dong Yang, Liuh-Yow Chen, Jiancong Liang, Heekyung Kate Chae, Amin Safari, Dan Liu, Zhou Songyang

Mol Cell Proteomics. 2011 Feb; 10(2): M110.001628. Published online 2010 Nov 11. doi: 10.1074/mcp.M110.001628

PMCID:: PMC3033672

Abstract Article PDF–1.5M

Select item 300858612.

Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics

Eric J. Bennett, John Rush, Steven P. Gygi, J. Wade Harper

Cell. Author manuscript; available in PMC 2011 Dec 10.

Published in final edited form as: Cell. 2010 Dec 10; 143(6): 951–965. doi: 10.1016/j.cell.2010.11.017

PMCID:: PMC3008586

Abstract Article PDF–3.0M

Select item 257212713.

Molecular mimicry between IL-33 and KSHV for attachment to chromatin through the H2A–H2B acidic pocket

Lucie Roussel, Monique Erard, Corinne Cayrol, Jean-Philippe Girard

EMBO Rep. 2008 Oct; 9(10): 1006–1012. Published online 2008 Aug 8. doi: 10.1038/embor.2008.145

PMCID:: PMC2572127

Abstract Article PDF–1.2M

Select item 122327714.

Regulation of transcription by the heterogeneous nuclear ribonucleoprotein E1B-AP5 is mediated by complex formation with the novel bromodomain-containing protein BRD7.

Julia Kzhyshkowska, Andre Rusch, Hans Wolf, Thomas Dobner

Biochem J. 2003 Apr 15; 371(Pt 2): 385–393. doi: 10.1042/BJ20021281

PMCID:: PMC1223277

Summary PDF–363K

Select item 29182615.

Regulation of HIV-1 gene expression by histone acetylation and factor recruitment at the LTR promoter

Marina Lusic, Alessandro Marcello, Anna Cereseto, Mauro Giacca

EMBO J. 2003 Dec 15; 22(24): 6550–6561. doi: 10.1093/emboj/cdg631

PMCID:: PMC291826

Abstract Article PDF–664K

Select item 13924116.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 11063317.

Transcriptional Activation of the Integrated Chromatin-Associated Human Immunodeficiency Virus Type 1 Promoter

Aboubaker El Kharroubi, Graziella Piras, Ralf Zensen, Malcolm A. Martin

Mol Cell Biol. 1998 May; 18(5): 2535–2544. doi: 10.1128/mcb.18.5.2535

PMCID:: PMC110633

Abstract Article PDF–1.6M

Select item 8396118.

Gadd45, a p53-Responsive Stress Protein, Modifies DNA Accessibility on Damaged Chromatin

France Carrier, Philippe T. Georgel, Philippe Pourquier, Mellissa Blake, H. Udo Kontny, Michael J. Antinore, Marzia Gariboldi, Timothy G. Myers, John N. Weinstein, Yves Pommier, Albert J. Fornace, Jr.

Mol Cell Biol. 1999 Mar; 19(3): 1673–1685. doi: 10.1128/mcb.19.3.1673