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Select item 103447851.

Class 3 PI3K coactivates the circadian clock to promote rhythmic de novo purine synthesis

Chantal Alkhoury, Nathaniel F. Henneman, Volodymyr Petrenko, Yui Shibayama, Arianna Segaloni, Alexis Gadault, Ivan Nemazanyy, Edouard Le Guillou, Amare Desalegn Wolide, Konstantina Antoniadou, Xin Tong, Teruya Tamaru, Takeaki Ozawa, Muriel Girard, Karim Hnia, Dominik Lutter, Charna Dibner, Ganna Panasyuk

Nat Cell Biol. 2023; 25(7): 975–988. Published online 2023 Jul 6. doi: 10.1038/s41556-023-01171-3

PMCID:: PMC10344785

Abstract Article PDF–11M

Select item 80322382.

Mutant HTT (huntingtin) impairs mitophagy in a cellular model of Huntington disease

Sandra Franco-Iborra, Ainhoa Plaza-Zabala, Marta Montpeyo, David Sebastian, Miquel Vila, Marta Martinez-Vicente

Autophagy. 2021; 17(3): 672–689. Published online 2020 Feb 24. doi: 10.1080/15548627.2020.1728096

PMCID:: PMC8032238

Abstract Article PDF–6.1M

Select item 79387703.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 64510014.

The class 3 PI3K coordinates autophagy and mitochondrial lipid catabolism by controlling nuclear receptor PPARα

Anton Iershov, Ivan Nemazanyy, Chantal Alkhoury, Muriel Girard, Esther Barth, Nicolas Cagnard, Alexandra Montagner, Dominique Chretien, Elena I. Rugarli, Herve Guillou, Mario Pende, Ganna Panasyuk

Nat Commun. 2019; 10: 1566. Published online 2019 Apr 5. doi: 10.1038/s41467-019-09598-9

PMCID:: PMC6451001

Abstract Article PDF–5.9M

Select item 58970535.

Mutations in Vps15 perturb neuronal migration in mice and are associated with neurodevelopmental disease in humans

Thomas Gstrein, Andrew Edwards, Anna Pristoupilová, Ines Leca, Martin Breuss, Sandra Pilat-Carotta, Andi H. Hansen, Ratna Tripathy, Anna K. Traunbauer, Tobias Hochstoeger, Gavril Rosoklija, Marco Repic, Lukas Landler, Viktor Stránecký, Gerhard Dürnberger, Thomas M. Keane, Johannes Zuber, David J. Adams, Jonathan Flint, Tomas Honzik, Marta Gut, Sergi Beltran, Karl Mechtler, Elliott Sherr, Stanislav Kmoch, Ivo Gut, David A. Keays

Nat Neurosci. Author manuscript; available in PMC 2018 Apr 12.

Published in final edited form as: Nat Neurosci. 2018 Feb; 21(2): 207–217. Published online 2018 Jan 8. doi: 10.1038/s41593-017-0053-5

Correction in:: Nat Neurosci. 2018 Jun 6

PMCID:: PMC5897053

Abstract Article PDF–1.2M

Select item 53812266.

Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function

Tingting Zhang, Wei Du, Andrew F. Wilson, Satoshi H. Namekawa, Paul R. Andreassen, Amom Ruhikanta Meetei, Qishen Pang

Sci Rep. 2017; 7: 45626. Published online 2017 Apr 5. doi: 10.1038/srep45626

PMCID:: PMC5381226

Abstract Article PDF–1.4M

Select item 45795707.

Class III PI3K regulates organismal glucose homeostasis by providing negative feedback on hepatic insulin signalling

Ivan Nemazanyy, Guillaume Montagnac, Ryan C. Russell, Lucille Morzyglod, Anne-Françoise Burnol, Kun-Liang Guan, Mario Pende, Ganna Panasyuk

Nat Commun. 2015; 6: 8283. Published online 2015 Sep 21. doi: 10.1038/ncomms9283

PMCID:: PMC4579570

Abstract Article PDF–3.1M

Select item 40087088.

Connexins modulate autophagosome biogenesis

Eloy Bejarano, Andrea Yuste, Bindi Patel, Randy F. Stout, Jr, David C. Spray, Ana Maria Cuervo

Nat Cell Biol. Author manuscript; available in PMC 2014 Nov 1.

Published in final edited form as: Nat Cell Biol. 2014 May; 16(5): 401–414. Published online 2014 Apr 6. doi: 10.1038/ncb2934

PMCID:: PMC4008708

Abstract Article PDF–2.0M

Select item 38961259.

Functional interaction between autophagy and ciliogenesis

Olatz Pampliega, Idil Orhon, Bindi Patel, Sunandini Sridhar, Antonio Díaz-Carretero, Isabelle Beau, Patrice Codogno, Birgit Satir, Peter Satir, Ana Maria Cuervo

Nature. Author manuscript; available in PMC 2014 Apr 10.

Published in final edited form as: Nature. 2013 Oct 10; 502(7470): 194–200. Published online 2013 Oct 2. doi: 10.1038/nature12639

PMCID:: PMC3896125

Abstract Article PDF–2.3M

Select item 377944910.

Defects of Vps15 in skeletal muscles lead to autophagic vacuolar myopathy and lysosomal disease

Ivan Nemazanyy, Bert Blaauw, Cecilia Paolini, Catherine Caillaud, Feliciano Protasi, Amelie Mueller, Tassula Proikas-Cezanne, Ryan C Russell, Kun-Liang Guan, Ichizo Nishino, Marco Sandri, Mario Pende, Ganna Panasyuk

EMBO Mol Med. 2013 Jun; 5(6): 870–890. Published online 2013 Apr 30. doi: 10.1002/emmm.201202057

PMCID:: PMC3779449

Abstract Article PDF–2.9M

Select item 358715911.

Differential regulation of distinct Vps34 complexes by AMPK in nutrient stress and autophagy

Joungmok Kim, Young Chul Kim, Chong Fang, Ryan C. Russell, Jeong Hee Kim, Weiliang Fan, Rong Liu, Qing Zhong, Kun-Liang Guan

Cell. Author manuscript; available in PMC 2014 Jan 17.

Published in final edited form as: Cell. 2013 Jan 17; 152(1-2): 290–303. doi: 10.1016/j.cell.2012.12.016

PMCID:: PMC3587159

Abstract Article PDF–3.0M

Select item 317805912.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253413.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 282877514.

Dynamin-1 co-associates with native mouse brain BK_Ca channels: Proteomics analysis of synaptic protein complexes

Giorgio Gorini, Olga Ponomareva, Kevin S. Shores, Maria D. Person, R. Adron Harris, R. Dayne Mayfield

FEBS Lett. Author manuscript; available in PMC 2011 Mar 5.

Published in final edited form as: FEBS Lett. 2010 Mar 5; 584(5): 845–851. Published online 2010 Jan 29. doi: 10.1016/j.febslet.2009.12.061

PMCID:: PMC2828775

Abstract Article PDF–918K

Select item 255627015.

Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin

Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108

PMCID:: PMC2556270

Abstract Article PDF–493K

Select item 52892816.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 43978317.

Genomic Analysis of Mouse Retinal Development

Seth Blackshaw, Sanjiv Harpavat, Jeff Trimarchi, Li Cai, Haiyan Huang, Winston P Kuo, Griffin Weber, Kyungjoon Lee, Rebecca E Fraioli, Seo-Hee Cho, Rachel Yung, Elizabeth Asch, Lucila Ohno-Machado, Wing H Wong, Constance L Cepko

PLoS Biol. 2004 Sep; 2(9): e247. Published online 2004 Jun 29. doi: 10.1371/journal.pbio.0020247

PMCID:: PMC439783

Abstract Article PDF–975K

Select item 31099218.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098019.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 28355420.

Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention

Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands

Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100

Correction in:: Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.

PMCID:: PMC283554

Abstract Article PDF–481K

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