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Items: 1 to 20 of 32

1.
APOBEC mutagenesis is a common process in normal human small intestine
Yichen Wang, Philip S. Robinson, Tim H. H. Coorens, Luiza Moore, Henry Lee-Six, Ayesha Noorani, Mathijs A. Sanders, Hyunchul Jung, Riku Katainen, Robert Heuschkel, Roxanne Brunton-Sim, Robyn Weston, Debbie Read, Beverley Nobbs, Rebecca C. Fitzgerald, Kourosh Saeb-Parsy, Iñigo Martincorena, Peter J. Campbell, Simon Rushbrook, Matthias Zilbauer, Simon James Alexander Buczacki, Michael R. Stratton
Nat Genet. 2023; 55(2): 246–254. Published online 2023 Jan 26. doi: 10.1038/s41588-022-01296-5
PMCID:
PMC9925384
AbstractArticlePDF–5.7M
2.
The roles of APOBEC-mediated RNA editing in SARS-CoV-2 mutations, replication and fitness
Kyumin Kim, Peter Calabrese, Shanshan Wang, Chao Qin, Youliang Rao, Pinghui Feng, Xiaojiang S. Chen
Sci Rep. 2022; 12: 14972. Published online 2022 Sep 13. doi: 10.1038/s41598-022-19067-x
PMCID:
PMC9470679
AbstractArticlePDF–5.8M
3.
Harnessing A3G for efficient and selective C-to-T conversion at C-rich sequences
Wenxia Yu, Jianan Li, Shisheng Huang, Xiangyang Li, Ping Li, Guanglei Li, Aibin Liang, Tian Chi, Xingxu Huang
BMC Biol. 2021; 19: 34. Published online 2021 Feb 18. doi: 10.1186/s12915-020-00879-0
PMCID:
PMC7893952
AbstractArticlePDF–7.3M
4.
APOBEC1 cytosine deaminase activity on single-stranded DNA is suppressed by replication protein A
Lai Wong, Frederick S Vizeacoumar, Franco J Vizeacoumar, Linda Chelico
Nucleic Acids Res. 2021 Jan 11; 49(1): 322–339. Published online 2020 Dec 16. doi: 10.1093/nar/gkaa1201
PMCID:
PMC7797036
AbstractArticlePDF–5.0M
5.
A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
Nature. Author manuscript; available in PMC 2020 Oct 8.
Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x
PMCID:
PMC7169983
AbstractArticlePDF–5.4M
6.
Comparison of RNA editing activity of APOBEC1-A1CF and APOBEC1-RBM47 complexes reconstituted in HEK293T cells
Aaron D. Wolfe, Don B. Arnold, Xiaojiang Chen
J Mol Biol. Author manuscript; available in PMC 2020 Mar 29.
Published in final edited form as: J Mol Biol. 2019 Mar 29; 431(7): 1506–1517. Published online 2019 Mar 4. doi: 10.1016/j.jmb.2019.02.025
PMCID:
PMC6443457
AbstractArticlePDF–1.0M
7.
Estrogen-regulated feedback loop limits the efficacy of estrogen receptor–targeted breast cancer therapy
Tengfei Xiao, Wei Li, Xiaoqing Wang, Han Xu, Jixin Yang, Qiu Wu, Ying Huang, Joseph Geradts, Peng Jiang, Teng Fei, David Chi, Chongzhi Zang, Qi Liao, Jonathan Rennhack, Eran Andrechek, Nanlin Li, Simone Detre, Mitchell Dowsett, Rinath M. Jeselsohn, X. Shirley Liu, Myles Brown
Proc Natl Acad Sci U S A. 2018 Jul 31; 115(31): 7869–7878. Published online 2018 Jul 9. doi: 10.1073/pnas.1722617115
PMCID:
PMC6077722
AbstractArticlePDF–2.4M
8.
Associations between activation-induced cytidine deaminase/apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like cytidine deaminase expression, hepatitis B virus (HBV) replication and HBV-associated liver disease (Review)
XIUTING HE, JIE LI, JING WU, MANLI ZHANG, PUJUN GAO
Mol Med Rep. 2015 Nov; 12(5): 6405–6414. Published online 2015 Sep 10. doi: 10.3892/mmr.2015.4312
PMCID:
PMC4626158
AbstractArticlePDF–663K
9.
Genomic Analyses Reveal Mutational Signatures and Frequently Altered Genes in Esophageal Squamous Cell Carcinoma
Ling Zhang, Yong Zhou, Caixia Cheng, Heyang Cui, Le Cheng, Pengzhou Kong, Jiaqian Wang, Yin Li, Wenliang Chen, Bin Song, Fang Wang, Zhiwu Jia, Lin Li, Yaoping Li, Bin Yang, Jing Liu, Ruyi Shi, Yanghui Bi, Yanyan Zhang, Juan Wang, Zhenxiang Zhao, Xiaoling Hu, Jie Yang, Hongyi Li, Zhibo Gao, Gang Chen, Xuanlin Huang, Xukui Yang, Shengqing Wan, Chao Chen, Bin Li, Yongkai Tan, Longyun Chen, Minghui He, Sha Xie, Xiangchun Li, Xuehan Zhuang, Mengyao Wang, Zhi Xia, Longhai Luo, Jie Ma, Bing Dong, Jiuzhou Zhao, Yongmei Song, Yunwei Ou, Enming Li, Liyan Xu, Jinfen Wang, Yanfeng Xi, Guodong Li, Enwei Xu, Jianfang Liang, Xiaofeng Yang, Jiansheng Guo, Xing Chen, Yanbo Zhang, Qingshan Li, Lixin Liu, Yingrui Li, Xiuqing Zhang, Huanming Yang, Dongxin Lin, Xiaolong Cheng, Yongjun Guo, Jun Wang, Qimin Zhan, Yongping Cui
Am J Hum Genet. 2015 Apr 2; 96(4): 597–611. doi: 10.1016/j.ajhg.2015.02.017
Correction in:
Am J Hum Genet. 2015 Nov 5; 97(5): 769.
Correction in:
Am J Hum Genet. 2020 Aug 6; 107(2): 375.
Correction in:
Am J Hum Genet. 2020 Sep 3; 107(3): 579.
PMCID:
PMC4385186
AbstractArticlePDF–3.9M
10.
C to U RNA editing mediated by APOBEC1 requires RNA-binding protein RBM47
Nicolas Fossat, Karin Tourle, Tania Radziewic, Kristen Barratt, Doreen Liebhold, Joshua B Studdert, Melinda Power, Vanessa Jones, David A F Loebel, Patrick P L Tam
EMBO Rep. 2014 Aug; 15(8): 903–910. Published online 2014 Jun 10. doi: 10.15252/embr.201438450
PMCID:
PMC4197048
AbstractArticlePDF–2.2M
11.
The RNA-editing Enzyme APOBEC1 Requires Heterogeneous Nuclear Ribonucleoprotein Q Isoform 6 for Efficient Interaction with Interleukin-8 mRNA
Yuko Shimizu, Hironori Nishitsuji, Hiroyuki Marusawa, Saneyuki Ujino, Hiroshi Takaku, Kunitada Shimotohno
J Biol Chem. 2014 Sep 19; 289(38): 26226–26238. Published online 2014 Aug 6. doi: 10.1074/jbc.M114.563221
PMCID:
PMC4176254
AbstractArticlePDF–452K
12.
The RNA editing enzyme APOBEC1 induces somatic mutations and a compatible mutational signature is present in esophageal adenocarcinomas
Giulia Saraconi, Francesco Severi, Cesare Sala, Giorgio Mattiuz, Silvestro G Conticello
Genome Biol. 2014; 15(7): 417. Published online 2014 Jul 31. doi: 10.1186/s13059-014-0417-z
Correction in:
Genome Biol. 2014; 15(11): 497.
PMCID:
PMC4144122
AbstractArticlePDF–659K
13.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
14.
Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain
Junjie U. Guo, Yijing Su, Chun Zhong, Guo-li Ming, Hongjun Song
Cell. Author manuscript; available in PMC 2012 Apr 29.
Published in final edited form as: Cell. 2011 Apr 29; 145(3): 423–434. Published online 2011 Apr 14. doi: 10.1016/j.cell.2011.03.022
PMCID:
PMC3088758
AbstractArticlePDF–1.3M
15.
Variation at the NFATC2 Locus Increases the Risk of Thiazolidinedione-Induced Edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) Study
Swneke D. Bailey, Changchun Xie, Ron Do, Alexandre Montpetit, Rafael Diaz, Viswanathan Mohan, Bernard Keavney, Salim Yusuf, Hertzel C. Gerstein, James C. Engert, Sonia Anand, on behalf of the DREAM investigators
Diabetes Care. 2010 Oct; 33(10): 2250–2253. Published online 2010 Jul 13. doi: 10.2337/dc10-0452
PMCID:
PMC2945168
AbstractArticlePDF–153K
16.
Hypermutation induced by APOBEC-1 overexpression can be eliminated
Zhigang Chen, Thomas L. Eggerman, Alexander V. Bocharov, Irina N. Baranova, Tatyana G. Vishnyakova, Gyorgy Csako, Amy P. Patterson
RNA. 2010 May; 16(5): 1040–1052. doi: 10.1261/rna.1863010
PMCID:
PMC2856876
AbstractArticlePDF–1.2M
17.
Large-Scale candidate gene analysis of spontaneous hepatitis C virus clearance
Timothy L Mosbruger, Priya Duggal, James J. Goedert, Gregory D Kirk, W. Keith Hoots, Leslie H Tobler, Michael Busch, Marion G. Peters, Hugo R Rosen, David L Thomas, Chloe L Thio
J Infect Dis. Author manuscript; available in PMC 2011 May 1.
Published in final edited form as: J Infect Dis. 2010 May 1; 201(9): 1371–1380. doi: 10.1086/651606
PMCID:
PMC2853721
AbstractArticlePDF–159K
18.
The Expression of ApoB mRNA Editing Factors Are Not the Sole Determinants for the Induction of Editing in Differentiating Caco-2 Cells
Chad A. Galloway, Harold C. Smith
Biochem Biophys Res Commun. Author manuscript; available in PMC 2011 Jan 1.
Published in final edited form as: Biochem Biophys Res Commun. 2010 Jan 1; 391(1): 659. Published online 2009 Nov 20. doi: 10.1016/j.bbrc.2009.11.116
PMCID:
PMC2814771
AbstractArticlePDF–437K
19.
Identification of two common variants contributing to serum apolipoprotein B levels in Mexicans
Daphna Weissglas-Volkov, Christopher L. Plaisier, Adriana Huertas-Vazquez, Ivette Cruz-Bautista, Daniela Riaño-Barros, Miguel Herrera-Hernandez, Laura Riba, Rita M. Cantor, Janet S. Sinsheimer, Carlos A. Aguilar-Salinas, Teresa Tusie-Luna, Päivi Pajukanta
Arterioscler Thromb Vasc Biol. Author manuscript; available in PMC 2010 Oct 1.
Published in final edited form as: Arterioscler Thromb Vasc Biol. 2010 Feb; 30(2): 353–359. Published online 2009 Dec 3. doi: 10.1161/ATVBAHA.109.196402
PMCID:
PMC2809779
AbstractArticlePDF–967K
20.
Gene-centric Association Signals for Lipids and Apolipoproteins Identified via the HumanCVD BeadChip
Philippa J. Talmud, Fotios Drenos, Sonia Shah, Tina Shah, Jutta Palmen, Claudio Verzilli, Tom R. Gaunt, Jacky Pallas, Ruth Lovering, Kawah Li, Juan Pablo Casas, Reecha Sofat, Meena Kumari, Santiago Rodriguez, Toby Johnson, Stephen J. Newhouse, Anna Dominiczak, Nilesh J. Samani, Mark Caulfield, Peter Sever, Alice Stanton, Denis C. Shields, on behalf of the ASCOT investigators, Sandosh Padmanabhan, Olle Melander, Claire Hastie, Christian Delles, on behalf of the NORDIL investigators, Shah Ebrahim, Michael G. Marmot, George Davey Smith, Debbie A. Lawlor, Patricia B. Munroe, for the BRIGHT Consortium, Ian N. Day, Mika Kivimaki, John Whittaker, Steve E. Humphries, Aroon D. Hingorani
Am J Hum Genet. 2009 Nov 13; 85(5): 628–642. doi: 10.1016/j.ajhg.2009.10.014
PMCID:
PMC2775832
AbstractArticlePDF–2.8M

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