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Items: 1 to 20 of 44

1.
Identification of motif-based interactions between SARS-CoV-2 protein domains and human peptide ligands pinpoint antiviral targets
Filip Mihalič, Caroline Benz, Eszter Kassa, Richard Lindqvist, Leandro Simonetti, Raviteja Inturi, Hanna Aronsson, Eva Andersson, Celestine N. Chi, Norman E. Davey, Anna K. Överby, Per Jemth, Ylva Ivarsson
Nat Commun. 2023; 14: 5636. Published online 2023 Sep 13. doi: 10.1038/s41467-023-41312-8
PMCID:
PMC10499821
AbstractArticlePDF–2.6M
2.
Variants Identified in the HOXC13 and HOXD13 Genes Suggest Association with Cervical Cancer in a Cohort of Mexican Women
Karina Janett Juárez-Rendón, Manuel Alejandro Castro-García, Diddier Giovanni Prada-Ortega, Gildardo Rivera, Luz María Ruíz-Godoy, Virginia Isabel Enríquez-Cárcamo, Miguel Angel Reyes-Lopez
Genes (Basel) 2023 Feb; 14(2): 358. Published online 2023 Jan 30. doi: 10.3390/genes14020358
PMCID:
PMC9957514
AbstractArticlePDF–693K
3.
A whole genome CRISPR screen identifies AHR loss as a mechanism of resistance to a PARP7 inhibitor
Huadong Chen, Morgan E. Diolaiti, Patrick C. O’Leary, Ajda Rojc, Nevan J. Krogan, Minkyu Kim, Alan Ashworth
Mol Cancer Ther. Author manuscript; available in PMC 2023 Jan 5.
Published in final edited form as: Mol Cancer Ther. 2022 Jul 5; 21(7): 1076–1089. doi: 10.1158/1535-7163.MCT-21-0841
PMCID:
PMC9769698
AbstractArticlePDF–2.7M
4.
EWS::FLI1 and HOXD13 control tumor cell plasticity in Ewing sarcoma
April A. Apfelbaum, Feinan Wu, Allegra G. Hawkins, Brian Magnuson, Jennifer A. Jiménez, Sean D. Taylor, Emma D. Wrenn, Olivia Waltner, Elise R. Pfaltzgraff, Jane Y. Song, Cody Hall, Deneen M. Wellik, Mats Ljungman, Scott N. Furlan, Russell J.H. Ryan, Jay F. Sarthy, Elizabeth R. Lawlor
Clin Cancer Res. Author manuscript; available in PMC 2023 Apr 14.
Published in final edited form as: Clin Cancer Res. 2022 Oct 14; 28(20): 4466–4478. doi: 10.1158/1078-0432.CCR-22-0384
PMCID:
PMC9588607
AbstractArticlePDF–2.5M
5.
The in vivo Interaction Landscape of Histones H3.1 and H3.3
Robert Siddaway, Scott Milos, Étienne Coyaud, Hwa Young Yun, Shahir M. Morcos, Sanja Pajovic, Eric I. Campos, Brian Raught, Cynthia Hawkins
Mol Cell Proteomics. 2022 Oct; 21(10): 100411. Published online 2022 Sep 9. doi: 10.1016/j.mcpro.2022.100411
PMCID:
PMC9540345
AbstractArticlePDF–3.9M
6.
Identification of a HOXD13 variant in a Mongolian family with incomplete penetrance syndactyly by exon sequencing
Husile Husile, Zhifeng Wu, Liqing Yang, Yaning Cao, Qizhu Wu
BMC Med Genomics. 2022; 15: 210. Published online 2022 Oct 4. doi: 10.1186/s12920-022-01360-3
PMCID:
PMC9533607
AbstractArticlePDF–1.4M
7.
OpenCell: proteome-scale endogenous tagging enables the cartography of human cellular organization
Nathan H. Cho, Keith C. Cheveralls, Andreas-David Brunner, Kibeom Kim, André C. Michaelis, Preethi Raghavan, Hirofumi Kobayashi, Laura Savy, Jason Y. Li, Hera Canaj, James Y.S. Kim, Edna M. Stewart, Christian Gnann, Frank McCarthy, Joana P. Cabrera, Rachel M. Brunetti, Bryant B. Chhun, Greg Dingle, Marco Y. Hein, Bo Huang, Shalin B. Mehta, Jonathan S. Weissman, Rafael Gómez-Sjöberg, Daniel N. Itzhak, Loic A. Royer, Matthias Mann, Manuel D. Leonetti
Science. Author manuscript; available in PMC 2022 Sep 11.
Published in final edited form as: Science. 2022 Mar 11; 375(6585): eabi6983. Published online 2022 Mar 11. doi: 10.1126/science.abi6983
PMCID:
PMC9119736
AbstractArticlePDF–3.3M
8.
ATRX proximal protein associations boast roles beyond histone deposition
William A. Scott, Erum Z. Dhanji, Boris J. A. Dyakov, Ema S. Dreseris, Jonathon S. Asa, Laura J. Grange, Mila Mirceta, Christopher E. Pearson, Grant S. Stewart, Anne-Claude Gingras, Eric I. Campos
PLoS Genet. 2021 Nov; 17(11): e1009909. Published online 2021 Nov 15. doi: 10.1371/journal.pgen.1009909
PMCID:
PMC8629390
AbstractArticlePDF–4.0M
9.
Mutant Idh2 cooperates with a NUP98-HOXD13 fusion to induce early immature thymocyte precursor ALL
Liat Goldberg, Vijay Negi, Yang Jo Chung, Masahiro Onozawa, Yuelin J. Zhu, Robert L. Walker, Rachel Pierce, Daxesh P. Patel, Kristopher W. Krausz, Frank J. Gonzalez, Margaret A. Goodell, Benjamin A.T. Rodriguez, Paul S. Meltzer, Peter D. Aplan
Cancer Res. Author manuscript; available in PMC 2022 Apr 1.
Published in final edited form as: Cancer Res. 2021 Oct 1; 81(19): 5033–5046. Published online 2021 Jul 28. doi: 10.1158/0008-5472.CAN-21-1027
PMCID:
PMC8487989
AbstractArticlePDF–2.4M
10.
HOXD13 promotes the malignant progression of colon cancer by upregulating PTPRN2
Jiangyan Yin, Yi Guo
Cancer Med. 2021 Aug; 10(16): 5524–5533. Published online 2021 Jul 17. doi: 10.1002/cam4.4078
PMCID:
PMC8366098
AbstractArticlePDF–2.1M
11.
Genome sequencing in families with congenital limb malformations
Jonas Elsner, Martin A. Mensah, Manuel Holtgrewe, Jakob Hertzberg, Stefania Bigoni, Andreas Busche, Marie Coutelier, Deepthi C. de Silva, Nursel Elçioglu, Isabel Filges, Erica Gerkes, Katta M. Girisha, Luitgard Graul-Neumann, Aleksander Jamsheer, Peter Krawitz, Ingo Kurth, Susanne Markus, Andre Megarbane, André Reis, Miriam S. Reuter, Daniel Svoboda, Christopher Teller, Beyhan Tuysuz, Seval Türkmen, Meredith Wilson, Rixa Woitschach, Inga Vater, Almuth Caliebe, Wiebke Hülsemann, Denise Horn, Stefan Mundlos, Malte Spielmann
Hum Genet. 2021; 140(8): 1229–1239. Published online 2021 Jun 22. doi: 10.1007/s00439-021-02295-y
PMCID:
PMC8263393
AbstractArticlePDF–7.1M
12.
PRISMA and BioID disclose a motifs-based interactome of the intrinsically disordered transcription factor C/EBPα
Evelyn Ramberger, Valeria Sapozhnikova, Elisabeth Kowenz-Leutz, Karin Zimmermann, Nathalie Nicot, Petr V. Nazarov, Daniel Perez-Hernandez, Ulf Reimer, Philipp Mertins, Gunnar Dittmar, Achim Leutz
iScience. 2021 Jun 25; 24(6): 102686. Published online 2021 Jun 4. doi: 10.1016/j.isci.2021.102686
PMCID:
PMC8220391
AbstractArticlePDF–4.4M
13.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
14.
Impact of cytosine methylation on DNA binding specificities of human transcription factors
Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush K. Das, Teemu Kivioja, Kashyap Dave, Fan Zhong, Kazuhiro R. Nitta, Minna Taipale, Alexander Popov, Paul A. Ginno, Silvia Domcke, Jian Yan, Dirk Schübeler, Charles Vinson, Jussi Taipale
Science. Author manuscript; available in PMC 2021 Mar 30.
Published in final edited form as: Science. 2017 May 5; 356(6337): eaaj2239. doi: 10.1126/science.aaj2239
PMCID:
PMC8009048
AbstractArticlePDF–2.6M
15.
A novel miR-7156-3p-HOXD13 axis modulates glioma progression by regulating tumor cell stemness
Junfeng Zhang, Mengsheng Deng, Haipeng Tong, Wei Xue, Yu Guo, Jianmin Wang, Lizhao Chen, Shunan Wang
Int J Biol Sci. 2020; 16(16): 3200–3209. Published online 2020 Oct 21. doi: 10.7150/ijbs.51293
PMCID:
PMC7645993
AbstractArticlePDF–3.4M
16.
APC/C-dependent control of gene expression and cell identity
Eugene Oh, Kevin G. Mark, Annamaria Mocciaro, Edmond R. Watson, J. Rajan Prabu, Denny D. Cha, Martin Kampmann, Nathan Gamarra, Coral Y. Zhou, Michael Rape
Nature. Author manuscript; available in PMC 2020 Aug 19.
Published in final edited form as: Nature. 2020 Mar; 579(7797): 136–140. Published online 2020 Feb 19. doi: 10.1038/s41586-020-2034-1
PMCID:
PMC7402266
AbstractArticlePDF–5.3M
17.
The tumor suppressor CIC directly regulates MAPK pathway genes via histone deacetylation
Simon Weissmann, Paul A. Cloos, Simone Sidoli, Ole N. Jensen, Steven Pollard, Kristian Helin
Cancer Res. Author manuscript; available in PMC 2019 Feb 1.
Published in final edited form as: Cancer Res. 2018 Aug 1; 78(15): 4114–4125. Published online 2018 May 29. doi: 10.1158/0008-5472.CAN-18-0342
PMCID:
PMC6076439
AbstractArticlePDF–2.5M
18.
HOXB9 Expression Correlates with Histological Grade and Prognosis in LSCC
Chuanhui Sun, Changsong Han, Peng Wang, Yinji Jin, Yanan Sun, Lingmei Qu
Biomed Res Int. 2017; 2017: 3680305. Published online 2017 Jul 20. doi: 10.1155/2017/3680305
PMCID:
PMC5541786
AbstractArticlePDF–2.1M
19.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
20.
The posterior HOXD locus: Its contribution to phenotype and malignancy of Ewing sarcoma
Kristina von Heyking, Laura Roth, Miriam Ertl, Oxana Schmidt, Julia Calzada-Wack, Frauke Neff, Elizabeth R. Lawlor, Stefan Burdach, Günther H.S. Richter
Oncotarget. 2016 Jul 5; 7(27): 41767–41780. Published online 2016 May 30. doi: 10.18632/oncotarget.9702
PMCID:
PMC5173095
AbstractArticlePDF–8.9M

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