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Items: 1 to 20 of 26

1.
Dissolution of ribonucleoprotein condensates by the embryonic stem cell protein L1TD1
Sang Woo Jin, Youngmo Seong, Dayoung Yoon, Young-Soo Kwon, Hoseok Song
Nucleic Acids Res. 2024 Apr 12; 52(6): 3310–3326. Published online 2024 Jan 2. doi: 10.1093/nar/gkad1244
PMCID:
PMC11014241
AbstractArticlePDF–4.0M
2.
Identification and characterization of the long non-coding RNA NFIA-AS2 as a novel locus for body mass index in American Indians
Khushdeep Bandesh, Michael Traurig, Peng Chen, Wen-Chi Hsueh, Robert L. Hanson, Paolo Piaggi, Leslie J. Baier
Int J Obes (Lond) 2023; 47(6): 434–442. Published online 2023 Feb 17. doi: 10.1038/s41366-023-01278-5
PMCID:
PMC10212757
AbstractArticlePDF–2.4M
3.
LINE-1 hypomethylation is associated with poor outcomes in locoregionally advanced oropharyngeal cancer
Mariateresa Casarotto, Valentina Lupato, Giorgio Giurato, Roberto Guerrieri, Sandro Sulfaro, Annamaria Salvati, Elisa D’Angelo, Carlo Furlan, Anna Menegaldo, Lorena Baboci, Barbara Montico, Irene Turturici, Riccardo Dolcetti, Salvatore Romeo, Vittorio Baggio, Stefania Corrado, Gianluca Businello, Maria Guido, Alessandro Weisz, Vittorio Giacomarra, Giovanni Franchin, Agostino Steffan, Luca Sigalotti, Emanuela Vaccher, Paolo Boscolo-Rizzo, Polesel Jerry, Giuseppe Fanetti, Elisabetta Fratta
Clin Epigenetics. 2022; 14: 171. Published online 2022 Dec 12. doi: 10.1186/s13148-022-01386-5
PMCID:
PMC9743592
AbstractArticlePDF–2.5M
4.
LINE-1 expression in cancer correlates with p53 mutation, copy number alteration, and S phase checkpoint
Wilson McKerrow, Xuya Wang, Carlos Mendez-Dorantes, Paolo Mita, Song Cao, Mark Grivainis, Li Ding, John LaCava, Kathleen H. Burns, Jef D. Boeke, David Fenyö
Proc Natl Acad Sci U S A. 2022 Feb 22; 119(8): e2115999119. Published online 2022 Feb 15. doi: 10.1073/pnas.2115999119
PMCID:
PMC8872788
AbstractArticlePDF–1.6M
5.
MxB inhibits long interspersed element type 1 retrotransposition
Yu Huang, Fengwen Xu, Shan Mei, Xiaoman Liu, Fei Zhao, Liang Wei, Zhangling Fan, Yamei Hu, Liming Wang, Bin Ai, Shan Cen, Chen Liang, Fei Guo
PLoS Genet. 2022 Feb; 18(2): e1010034. Published online 2022 Feb 16. doi: 10.1371/journal.pgen.1010034
PMCID:
PMC8849481
AbstractArticlePDF–2.7M
6.
Structural dissection of sequence recognition and catalytic mechanism of human LINE-1 endonuclease
Ian Miller, Max Totrov, Lioubov Korotchkina, Denis N Kazyulkin, Andrei V Gudkov, Sergey Korolev
Nucleic Acids Res. 2021 Nov 8; 49(19): 11350–11366. Published online 2021 Sep 23. doi: 10.1093/nar/gkab826
PMCID:
PMC8565326
AbstractArticlePDF–5.7M
7.
The Rhox gene cluster suppresses germline LINE1 transposition
Kun Tan, Matthew E. Kim, Hye-Won Song, David Skarbrevik, Eric Babajanian, Tracy A. Bedrosian, Fred H. Gage, Miles F. Wilkinson
Proc Natl Acad Sci U S A. 2021 Jun 8; 118(23): e2024785118. Published online 2021 Jun 3. doi: 10.1073/pnas.2024785118
PMCID:
PMC8201764
AbstractArticlePDF–2.0M
8.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
9.
Hepatitis C virus infection restricts human LINE-1 retrotransposition in hepatoma cells
Anja Schöbel, Van Nguyen-Dinh, Gerald G. Schumann, Eva Herker
PLoS Pathog. 2021 Apr; 17(4): e1009496. Published online 2021 Apr 19. doi: 10.1371/journal.ppat.1009496
PMCID:
PMC8084336
AbstractArticlePDF–4.9M
10.
AMPK Interactome Reveals New Function in Non-homologous End Joining DNA Repair
Zhen Chen, Chao Wang, Antrix Jain, Mrinal Srivastava, Mengfan Tang, Huimin Zhang, Xu Feng, Litong Nie, Dan Su, Yun Xiong, Sung Yun Jung, Jun Qin, Junjie Chen
Mol Cell Proteomics. 2020 Mar; 19(3): 467–477. Published online 2020 Jan 3. doi: 10.1074/mcp.RA119.001794
PMCID:
PMC7050103
AbstractArticlePDF–1.8M
11.
Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity
Jae Jin Kim, Seo Yun Lee, Fade Gong, Anna M. Battenhouse, Daniel R. Boutz, Aarti Bashyal, Samantha T. Refvik, Cheng-Ming Chiang, Blerta Xhemalce, Tanya T. Paull, Jennifer S. Brodbelt, Edward M. Marcotte, Kyle M. Miller
Genes Dev. 2019 Dec 1; 33(23-24): 1751–1774. doi: 10.1101/gad.331231.119
PMCID:
PMC6942044
AbstractArticlePDF–10M
12.
L1TD1 - a prognostic marker for colon cancer
Deepankar Chakroborty, Maheswara Reddy Emani, Riku Klén, Camilla Böckelman, Jaana Hagström, Caj Haglund, Ari Ristimäki, Riitta Lahesmaa, Laura L. Elo
BMC Cancer. 2019; 19: 727. Published online 2019 Jul 23. doi: 10.1186/s12885-019-5952-2
PMCID:
PMC6651905
AbstractArticlePDF–1.3M
13.
Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei
Domenico Fasci, Hugo van Ingen, Richard A. Scheltema, Albert J. R. Heck
Mol Cell Proteomics. 2018 Oct; 17(10): 2018–2033. Published online 2018 Jul 18. doi: 10.1074/mcp.RA118.000924
PMCID:
PMC6166682
AbstractArticlePDF–3.8M
14.
RNase H2, mutated in Aicardi‐Goutières syndrome, promotes LINE‐1 retrotransposition
Maria Benitez‐Guijarro, Cesar Lopez‐Ruiz, Žygimantė Tarnauskaitė, Olga Murina, Mahwish Mian Mohammad, Thomas C Williams, Adeline Fluteau, Laura Sanchez, Raquel Vilar‐Astasio, Marta Garcia‐Canadas, David Cano, Marie‐Jeanne HC Kempen, Antonio Sanchez‐Pozo, Sara R Heras, Andrew P Jackson, Martin AM Reijns, Jose L Garcia‐Perez
EMBO J. 2018 Aug 1; 37(15): e98506. Published online 2018 Jun 29. doi: 10.15252/embj.201798506
PMCID:
PMC6068448
AbstractArticlePDF–7.8M
15.
Insights into the ubiquitin-proteasome system of human embryonic stem cells
Isabel Saez, Seda Koyuncu, Ricardo Gutierrez-Garcia, Christoph Dieterich, David Vilchez
Sci Rep. 2018; 8: 4092. Published online 2018 Mar 6. doi: 10.1038/s41598-018-22384-9
PMCID:
PMC5840266
AbstractArticlePDF–2.9M
16.
SPAG6 and L1TD1 are transcriptionally regulated by DNA methylation in non-small cell lung cancers
Corinna Altenberger, Gerwin Heller, Barbara Ziegler, Erwin Tomasich, Maximilian Marhold, Thais Topakian, Leonhard Müllauer, Petra Heffeter, György Lang, Adelheid End-Pfützenreuter, Balazs Döme, Britt-Madeleine Arns, Walter Klepetko, Christoph C. Zielinski, Sabine Zöchbauer-Müller
Mol Cancer. 2017; 16: 1. Published online 2017 Jan 5. doi: 10.1186/s12943-016-0568-5
PMCID:
PMC5240214
AbstractArticlePDF–3.7M
17.
Dynamic Protein Interactions of the Polycomb Repressive Complex 2 during Differentiation of Pluripotent Cells
Giorgio Oliviero, Gerard L. Brien, Ariane Waston, Gundula Streubel, Emilia Jerman, Darrell Andrews, Benjamin Doyle, Nayla Munawar, Kieran Wynne, John Crean, Adrian P. Bracken, Gerard Cagney
Mol Cell Proteomics. 2016 Nov; 15(11): 3450–3460. Published online 2016 Sep 15. doi: 10.1074/mcp.M116.062240
PMCID:
PMC5098042
AbstractArticlePDF–1.9M
18.
The L1TD1 Protein Interactome Reveals the Importance of Post-transcriptional Regulation in Human Pluripotency
Maheswara Reddy Emani, Elisa Närvä, Aki Stubb, Deepankar Chakroborty, Miro Viitala, Anne Rokka, Nelly Rahkonen, Robert Moulder, Konstantin Denessiouk, Ras Trokovic, Riikka Lund, Laura L. Elo, Riitta Lahesmaa
Stem Cell Reports. 2015 Mar 10; 4(3): 519–528. Published online 2015 Feb 19. doi: 10.1016/j.stemcr.2015.01.014
PMCID:
PMC4376047
AbstractArticlePDF–2.9M
19.
Positive Selection and Multiple Losses of the LINE-1-Derived L1TD1 Gene in Mammals Suggest a Dual Role in Genome Defense and Pluripotency
Richard N. McLaughlin, Jr., Janet M. Young, Lei Yang, Rafik Neme, Holly A. Wichman, Harmit S. Malik
PLoS Genet. 2014 Sep; 10(9): e1004531. Published online 2014 Sep 11. doi: 10.1371/journal.pgen.1004531
PMCID:
PMC4161310
AbstractArticlePDF–1.7M
20.
LINE-1 hypomethylation in gastric cancer, detected by bisulfite pyrosequencing, is associated with poor prognosis
Hironobu Shigaki, Yoshifumi Baba, Masayuki Watanabe, Asuka Murata, Shiro Iwagami, Keisuke Miyake, Takatsugu Ishimoto, Masaaki Iwatsuki, Hideo Baba
Gastric Cancer. 2013; 16(4): 480–487. Published online 2012 Nov 21. doi: 10.1007/s10120-012-0209-7
PMCID:
PMC3824342
AbstractArticlePDF–375K

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