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Items: 17

1.
Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein–protein interactions in the human cell
Tara K. Bartolec, Xabier Vázquez-Campos, Alexander Norman, Clement Luong, Marcus Johnson, Richard J. Payne, Marc R. Wilkins, Joel P. Mackay, Jason K. K. Low
Proc Natl Acad Sci U S A. 2023 Apr 25; 120(17): e2219418120. Published online 2023 Apr 18. doi: 10.1073/pnas.2219418120
PMCID:
PMC10151615
AbstractArticlePDF–2.9M
2.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
3.
Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei
Domenico Fasci, Hugo van Ingen, Richard A. Scheltema, Albert J. R. Heck
Mol Cell Proteomics. 2018 Oct; 17(10): 2018–2033. Published online 2018 Jul 18. doi: 10.1074/mcp.RA118.000924
PMCID:
PMC6166682
AbstractArticlePDF–3.8M
4.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
5.
Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing
Teng Fei, Yiwen Chen, Tengfei Xiao, Wei Li, Laura Cato, Peng Zhang, Maura B. Cotter, Michaela Bowden, Rosina T. Lis, Shuang G. Zhao, Qiu Wu, Felix Y. Feng, Massimo Loda, Housheng Hansen He, X. Shirley Liu, Myles Brown
Proc Natl Acad Sci U S A. 2017 Jun 27; 114(26): E5207–E5215. Published online 2017 Jun 13. doi: 10.1073/pnas.1617467114
PMCID:
PMC5495225
AbstractArticlePDF–1.3M
6.
Molecular Identification of d-Ribulokinase in Budding Yeast and Mammals
Charandeep Singh, Enrico Glaab, Carole L. Linster
J Biol Chem. 2017 Jan 20; 292(3): 1005–1028. Published online 2016 Dec 1. doi: 10.1074/jbc.M116.760744
PMCID:
PMC5247636
AbstractArticlePDF–5.8M
7.
The BioPlex Network: A Systematic Exploration of the Human Interactome
Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2016 Jul 16.
Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043
PMCID:
PMC4617211
AbstractArticlePDF–2.2M
8.
Systematic VCP-UBXD Adaptor Network Proteomics Identifies a Role for UBXN10 in Regulating Ciliogenesis
Malavika Raman, Mikhail Sergeev, Maija Garnaas, John R. Lydeard, Edward L. Huttlin, Wolfram Goessling, Jagesh V. Shah, J. Wade Harper
Nat Cell Biol. Author manuscript; available in PMC 2016 Apr 1.
Published in final edited form as: Nat Cell Biol. 2015 Oct; 17(10): 1356–1369. Published online 2015 Sep 21. doi: 10.1038/ncb3238
Correction in:
Nat Cell Biol. 2016 Mar; 18(3): 347.
PMCID:
PMC4610257
AbstractArticlePDF–4.5M
9.
Novel Genetic Loci Identified for the Pathophysiology of Childhood Obesity in the Hispanic Population
Anthony G. Comuzzie, Shelley A. Cole, Sandra L. Laston, V. Saroja Voruganti, Karin Haack, Richard A. Gibbs, Nancy F. Butte
PLoS One. 2012; 7(12): e51954. Published online 2012 Dec 14. doi: 10.1371/journal.pone.0051954
PMCID:
PMC3522587
AbstractArticlePDF–130K
10.
Genome-wide association study of movement-related adverse antipsychotic effects
Karolina Åberg, Daniel E. Adkins, József Bukszár, Bradley T. Webb, Stanley N. Caroff, Del D. Miller, Jonathan Sebat, Scott Stroup, Ayman H. Fanous, Vladimir I. Vladimirov, Joseph L. McClay, Jeffrey A. Lieberman, Patrick F. Sullivan, Edwin J.C.G. van den Oord
Biol Psychiatry. Author manuscript; available in PMC 2012 Jul 3.
Published in final edited form as: Biol Psychiatry. 2010 Feb 1; 67(3): 279–282. Published online 2009 Oct 28. doi: 10.1016/j.biopsych.2009.08.036
PMCID:
PMC3388725
AbstractArticlePDF–39K
11.
The FGGY Carbohydrate Kinase Family: Insights into the Evolution of Functional Specificities
Ying Zhang, Olga Zagnitko, Irina Rodionova, Andrei Osterman, Adam Godzik
PLoS Comput Biol. 2011 Dec; 7(12): e1002318. Published online 2011 Dec 22. doi: 10.1371/journal.pcbi.1002318
PMCID:
PMC3245297
AbstractArticlePDF–3.0M
12.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
13.
Duffy-Null–Associated Low Neutrophil Counts Influence HIV-1 Susceptibility in High-Risk South African Black Women
Veron Ramsuran, Hemant Kulkarni, Weijing He, Koleka Mlisana, Edwina J. Wright, Lise Werner, John Castiblanco, Rahul Dhanda, Tuan Le, Matthew J. Dolan, Weihua Guan, Robin A. Weiss, Robert A. Clark, Salim S. Abdool Karim, Sunil K. Ahuja, Thumbi Ndung'u
Clin Infect Dis. 2011 May 15; 52(10): 1248–1256. doi: 10.1093/cid/cir119
PMCID:
PMC3115278
AbstractArticlePDF–543K
14.
Personalized Smoking Cessation: Interactions between Nicotine Dose, Dependence and Quit-Success Genotype Score
Jed E Rose, Frédérique M Behm, Tomas Drgon, Catherine Johnson, George R Uhl
Mol Med. 2010 Jul-Aug; 16(7-8): 247–253. Published online 2010 Mar 17. doi: 10.2119/molmed.2009.00159
Correction in:
Mol Med. 2012; 18(1): 729.
PMCID:
PMC2896464
AbstractArticlePDF–2.4M
15.
A two-stage genome-wide association study of sporadic amyotrophic lateral sclerosis
Adriano Chiò, Jennifer C. Schymick, Gabriella Restagno, Sonja W. Scholz, Federica Lombardo, Shiao-Lin Lai, Gabriele Mora, Hon-Chung Fung, Angela Britton, Sampath Arepalli, J. Raphael Gibbs, Michael Nalls, Stephen Berger, Lydia Coulter Kwee, Eugene Z. Oddone, Jinhui Ding, Cynthia Crews, Ian Rafferty, Nicole Washecka, Dena Hernandez, Luigi Ferrucci, Stefania Bandinelli, Jack Guralnik, Fabio Macciardi, Federica Torri, Sara Lupoli, Stephen J. Chanock, Gilles Thomas, David J. Hunter, Christian Gieger, H. Erich Wichmann, Andrea Calvo, Roberto Mutani, Stefania Battistini, Fabio Giannini, Claudia Caponnetto, Giovanni Luigi Mancardi, Vincenzo La Bella, Francesca Valentino, Maria Rosaria Monsurrò, Gioacchino Tedeschi, Kalliopi Marinou, Mario Sabatelli, Amelia Conte, Jessica Mandrioli, Patrizia Sola, Fabrizio Salvi, Ilaria Bartolomei, Gabriele Siciliano, Cecilia Carlesi, Richard W. Orrell, Kevin Talbot, Zachary Simmons, James Connor, Erik P. Pioro, Travis Dunkley, Dietrich A. Stephan, Dalia Kasperaviciute, Elizabeth M. Fisher, Sibylle Jabonka, Michael Sendtner, Marcus Beck, Lucie Bruijn, Jeffrey Rothstein, Silke Schmidt, Andrew Singleton, John Hardy, Bryan J. Traynor
Hum Mol Genet. 2009 Apr 15; 18(8): 1524–1532. Published online 2009 Feb 4. doi: 10.1093/hmg/ddp059
PMCID:
PMC2664150
AbstractArticlePDF–285K
16.
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano
Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406
PMCID:
PMC1356129
AbstractArticlePDF–438K
17.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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