PMC Links for GEO Profiles (Select 4028120) - PMC

Select item 82336941.

CD101 genetic variants modify regulatory and conventional T cell phenotypes and functions

Laura E. Richert-Spuhler, Corinne M. Mar, Paurvi Shinde, Feinan Wu, Ting Hong, Evan Greene, Sharon Hou, Katherine Thomas, Raphael Gottardo, Nelly Mugo, Guy de Bruyn, Connie Celum, Jared M. Baeten, Jairam R. Lingappa, Jennifer M. Lund, for the Partners in Prevention HSV/HIV Transmission Study, and the Partners PrEP Study Teams

Cell Rep Med. 2021 Jun 15; 2(6): 100322. Published online 2021 Jun 15. doi: 10.1016/j.xcrm.2021.100322

PMCID:: PMC8233694

Abstract Article PDF–2.7M

Select item 81650302.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 76549373.

Brief Report: Bacterial Vaginosis and Risk of HIV Infection in the Context of CD101 Gene Variation

Valentine Wanga, Romel D. Mackelprang, Katherine K. Thomas, Deborah Donnell, Craig R. Cohen, Nelly R. Mugo, Elizabeth A. Bukusi, Guy de Bruyn, Elizabeth Irungu, Connie Celum, Jared M. Baeten, Jairam R. Lingappa

J Acquir Immune Defic Syndr. 2020 Dec 15; 85(5): 584–587. Published online 2020 Sep 18. doi: 10.1097/QAI.0000000000002505

Correction in:: J Acquir Immune Defic Syndr. 2021 Mar 1; 86(3): 387.

PMCID:: PMC7654937

Abstract Article PDF–75K

Select item 73220674.

RIG-I regulates myeloid differentiation by promoting TRIM25-mediated ISGylation

Song-Fang Wu, Li Xia, Xiao-Dong Shi, Yu-Jun Dai, Wei-Na Zhang, Jun-Mei Zhao, Wu Zhang, Xiang-Qin Weng, Jing Lu, Huang-Ying Le, Sheng-ce Tao, Jiang Zhu, Zhu Chen, Yue-Ying Wang, Saijuan Chen

Proc Natl Acad Sci U S A. 2020 Jun 23; 117(25): 14395–14404. Published online 2020 Jun 8. doi: 10.1073/pnas.1918596117

PMCID:: PMC7322067

Abstract Article PDF–2.7M

Select item 56906915.

Whole genome sequencing of extreme phenotypes identifies variants in CD101 and UBE2V1 associated with increased risk of sexually acquired HIV-1

Romel D. Mackelprang, Michael J. Bamshad, Jessica X. Chong, Xuanlin Hou, Kati J. Buckingham, Kathryn Shively, Guy deBruyn, Nelly R. Mugo, James I. Mullins, M. Juliana McElrath, Jared M. Baeten, Connie Celum, Mary J. Emond, Jairam R. Lingappa, for the Partners in Prevention HSV/HIV Transmission Study and the Partners PrEP Study Teams

PLoS Pathog. 2017 Nov; 13(11): e1006703. Published online 2017 Nov 6. doi: 10.1371/journal.ppat.1006703

Correction in:: PLoS Pathog. 2019 Feb; 15(2): e1007588.

PMCID:: PMC5690691

Abstract Article PDF–2.9M

Select item 54154746.

Nucleotide substitutions in CD101, the human homolog of a diabetes susceptibility gene in non‐obese diabetic mouse, in patients with type 1 diabetes

Misako Okuno, Yoshihito Kasahara, Masafumi Onodera, Noriyuki Takubo, Michiko Okajima, Shigeru Suga, Nobuyuki Watanabe, Junichi Suzuki, Tadayuki Ayabe, Tatsuhiko Urakami, Tomoyuki Kawamura, Nobuyuki Kikuchi, Ichiro Yokota, Toru Kikuchi, Shin Amemiya, Kazuhiko Nakabayashi, Keiko Hayashi, Kenichiro Hata, Yoichi Matsubara, Tsutomu Ogata, Maki Fukami, Shigetaka Sugihara

J Diabetes Investig. 2017 May; 8(3): 286–294. Published online 2016 Nov 25. doi: 10.1111/jdi.12586

PMCID:: PMC5415474

Abstract Article PDF–700K

Select item 49633147.

CD101 inhibits the expansion of colitogenic T cells

Regina Schey, Heike Dornhoff, Julia L.C. Baier, Martin Purtak, Robert Opoka, Anna Katharina Koller, Raya Atreya, Tilman T. Rau, Christoph Daniel, Kerstin Amann, Christian Bogdan, Jochen Mattner

Mucosal Immunol. Author manuscript; available in PMC 2016 Aug 17.

Published in final edited form as: Mucosal Immunol. 2016 Sep; 9(5): 1205–1217. Published online 2016 Jan 27. doi: 10.1038/mi.2015.139

PMCID:: PMC4963314

Abstract Article PDF–1.5M

Select item 43670958.

Low expression of CD39⁺/CD45RA⁺ on regulatory T cells (T_reg) cells in type 1 diabetic children in contrast to high expression of CD101⁺/CD129⁺ on T_reg cells in children with coeliac disease

K Åkesson, A Tompa, A Rydén, M Faresjö

Clin Exp Immunol. 2015 Apr; 180(1): 70–82. Published online 2015 Mar 10. doi: 10.1111/cei.12559

PMCID:: PMC4367095

Abstract Article PDF–536K

Select item 35593479.

Modulation of Cytokine Release and Gene Expression by the Immunosuppressive Domain of gp41 of HIV-1

Joachim Denner, Magdalena Eschricht, Michael Lauck, Marwan Semaan, Philipp Schlaermann, Hyunmi Ryu, Levent Akyüz

PLoS One. 2013; 8(1): e55199. Published online 2013 Jan 30. doi: 10.1371/journal.pone.0055199

PMCID:: PMC3559347

Abstract Article PDF–1.0M

Select item 317805910.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 314288711.

Genetic variants at CD28, PRDM1, and CD2/CD58 are associated with rheumatoid arthritis risk

Soumya Raychaudhuri, Brian P. Thomson, Elaine F. Remmers, Stephen Eyre, Anne Hinks, Candace Guiducci, Joseph J. Catanese, Gang Xie, Eli A. Stahl, Robert Chen, Lars Alfredsson, Christopher I. Amos, Kristin G. Ardlie, BIRAC Consortium, Anne Barton, John Bowes, Noel P. Burtt, Monica Chang, Jonathan Coblyn, Karen H. Costenbader, Lindsey A. Criswell, J. Bart A. Crusius, Jing Cui, Phillip L. De Jager, Bo Ding, Paul Emery, Edward Flynn, Pille Harrison, Lynne J. Hocking, Tom W. J. Huizinga, Daniel L. Kastner, Xiayi Ke, Fina A. S. Kurreeman, Annette T. Lee, Xiangdong Liu, Yonghong Li, Paul Martin, Ann W. Morgan, Leonid Padyukov, David M. Reid, Mark Seielstad, Michael F. Seldin, Nancy A. Shadick, Sophia Steer, Paul P. Tak, Wendy Thomson, Annette H. M. van der Helm-van Mil, Irene E. van der Horst-Bruinsma, Michael E. Weinblatt, Anthony G. Wilson, Gert Jan Wolbink, Paul Wordsworth, YEAR Consortium, David Altshuler, Elizabeth W. Karlson, Rene E. M. Toes, Niek de Vries, Ann B. Begovich, Katherine A. Siminovitch, Jane Worthington, Lars Klareskog, Peter K. Gregersen, Mark J. Daly, Robert M. Plenge

Nat Genet. Author manuscript; available in PMC 2011 Jul 25.

Published in final edited form as: Nat Genet. 2009 Dec; 41(12): 1313–1318. Published online 2009 Nov 8. doi: 10.1038/ng.479

PMCID:: PMC3142887

Abstract Article PDF–751K

Select item 311175612.

Kaye M. Reid-Lombardo, Brooke L. Fridley, William R. Bamlet, Julie M. Cunningham, Michael G. Sarr, Gloria M. Petersen

Cancer Epidemiol Biomarkers Prev. Author manuscript; available in PMC 2012 Jun 1.

Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2011 Jun; 20(6): 1251–1254. Published online 2011 Apr 5. doi: 10.1158/1055-9965.EPI-11-0264

PMCID:: PMC3111756

Abstract Article PDF–313K

Select item 135612913.

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano

Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406

PMCID:: PMC1356129

Abstract Article PDF–438K

Select item 51531614.

Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions

Yutaka Suzuki, Riu Yamashita, Matsuyuki Shirota, Yuta Sakakibara, Joe Chiba, Junko Mizushima-Sugano, Kenta Nakai, Sumio Sugano

Genome Res. 2004 Sep; 14(9): 1711–1718. doi: 10.1101/gr.2435604

PMCID:: PMC515316

Abstract Article PDF–181K

Select item 13924115.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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