PMC Links for GEO Profiles (Select 40882221) - PMC

Select item 92791561.

A peroxisomal ubiquitin ligase complex forms a retrotranslocation channel

Peiqiang Feng, Xudong Wu, Satchal K. Erramilli, Joao A. Paulo, Pawel Knejski, Steven P. Gygi, Anthony A. Kossiakoff, Tom A. Rapoport

Nature. 2022; 607(7918): 374–380. Published online 2022 Jun 29. doi: 10.1038/s41586-022-04903-x

PMCID:: PMC9279156

Abstract Article PDF–16M

Select item 81650302.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 71699833.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 57038784.

The STUbL RNF4 regulates protein group SUMOylation by targeting the SUMO conjugation machinery

Ramesh Kumar, Román González-Prieto, Zhenyu Xiao, Matty Verlaan-de Vries, Alfred C. O. Vertegaal

Nat Commun. 2017; 8: 1809. Published online 2017 Nov 27. doi: 10.1038/s41467-017-01900-x

PMCID:: PMC5703878

Abstract Article PDF–3.7M

Select item 56306005.

Mammalian APE1 controls miRNA processing and its interactome is linked to cancer RNA metabolism

Giulia Antoniali, Fabrizio Serra, Lisa Lirussi, Mikiei Tanaka, Chiara D’Ambrosio, Shiheng Zhang, Slobodanka Radovic, Emiliano Dalla, Yari Ciani, Andrea Scaloni, Mengxia Li, Silvano Piazza, Gianluca Tell

Nat Commun. 2017; 8: 797. Published online 2017 Oct 6. doi: 10.1038/s41467-017-00842-8

PMCID:: PMC5630600

Abstract Article PDF–2.3M

Select item 45894906.

ATM Functions at the Peroxisome to Induce Pexophagy in Response to ROS

Jiangwei Zhang, Durga Nand Tripathi, Ji Jing, Angela Alexander, Jinhee Kim, Reid T. Powell, Ruhee Dere, Jacqueline Tait-Mulder, Ji-Hoon Lee, Tanya T. Paull, Raj K. Pandita, Vijaya K. Charaka, Tej K. Pandita, Michael B. Kastan, Cheryl Lyn Walker

Nat Cell Biol. Author manuscript; available in PMC 2016 Apr 1.

Published in final edited form as: Nat Cell Biol. 2015 Oct; 17(10): 1259–1269. Published online 2015 Sep 7. doi: 10.1038/ncb3230

PMCID:: PMC4589490

Abstract Article PDF–1.7M

Select item 40228787.

Distinct Modes of Ubiquitination of Peroxisome-targeting Signal Type 1 (PTS1) Receptor Pex5p Regulate PTS1 Protein Import

Kanji Okumoto, Hiromi Noda, Yukio Fujiki

J Biol Chem. 2014 May 16; 289(20): 14089–14108. Published online 2014 Mar 24. doi: 10.1074/jbc.M113.527937

PMCID:: PMC4022878

Abstract Article PDF–5.0M

Select item 32479998.

Two Proteases, Trypsin Domain-containing 1 (Tysnd1) and Peroxisomal Lon Protease (PsLon), Cooperatively Regulate Fatty Acid β-Oxidation in Peroxisomal Matrix

Kanji Okumoto, Yukari Kametani, Yukio Fujiki

J Biol Chem. 2011 Dec 30; 286(52): 44367–44379. Published online 2011 Oct 14. doi: 10.1074/jbc.M111.285197

PMCID:: PMC3247999

Abstract Article PDF–3.0M

Select item 31780599.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 264996710.

Identification of Novel Mutations and Sequence Variation in the Zellweger Syndrome Spectrum of Peroxisome Biogenesis Disorders

Wing Yan Yik, Steven J. Steinberg, Ann B. Moser, Hugo W. Moser, Joseph G. Hacia

Hum Mutat. Author manuscript; available in PMC 2009 Mar 2.

Published in final edited form as: Hum Mutat. 2009 Mar; 30(3): E467–E480. doi: 10.1002/humu.20932

PMCID:: PMC2649967

Abstract Article PDF–853K

Select item 217454711.

Pex19 Binds Multiple Peroxisomal Membrane Proteins, Is Predominantly Cytoplasmic, and Is Required for Peroxisome Membrane Synthesis

Katherine A. Sacksteder, Jacob M. Jones, Sarah T. South, Xiaoling Li, Yifei Liu, Stephen J. Gould

J Cell Biol. 2000 Mar 6; 148(5): 931–944. doi: 10.1083/jcb.148.5.931

PMCID:: PMC2174547

Abstract Article PDF–562K

Select item 215616312.

Pex12 Interacts with Pex5 and Pex10 and Acts Downstream of Receptor Docking in Peroxisomal Matrix Protein Import

Chia-Che Chang, Daniel S. Warren, Katherine A. Sacksteder, Stephen J. Gould

J Cell Biol. 1999 Nov 15; 147(4): 761–774. doi: 10.1083/jcb.147.4.761

PMCID:: PMC2156163

Abstract Article PDF–329K

Select item 213289113.

Peroxisome Synthesis in the Absence of Preexisting Peroxisomes

Sarah T. South, Stephen J. Gould

J Cell Biol. 1999 Jan 25; 144(2): 255–266. doi: 10.1083/jcb.144.2.255

PMCID:: PMC2132891

Abstract Article PDF–1.7M

Select item 137754014.

Phenotype-genotype relationships in complementation group 3 of the peroxisome-biogenesis disorders.

C C Chang, S J Gould

Am J Hum Genet. 1998 Nov; 63(5): 1294–1306. doi: 10.1086/302103

PMCID:: PMC1377540

Summary PDF–1.8M

Select item 135612915.

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano

Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406

PMCID:: PMC1356129

Abstract Article PDF–438K

Select item 52892816.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 13924117.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 10901618.

PEX12, the Pathogenic Gene of Group III Zellweger Syndrome: cDNA Cloning by Functional Complementation on a CHO Cell Mutant, Patient Analysis, and Characterization of Pex12p

Kanji Okumoto, Nobuyuki Shimozawa, Atsusi Kawai, Shigehiko Tamura, Toshiro Tsukamoto, Takashi Osumi, Hugo Moser, Ronald J. A. Wanders, Yasuyuki Suzuki, Naomi Kondo, Yukio Fujiki

Mol Cell Biol. 1998 Jul; 18(7): 4324–4336. doi: 10.1128/mcb.18.7.4324

PMCID:: PMC109016

Abstract Article PDF–3.3M

Select item 8710119.

Human Pex19p Binds Peroxisomal Integral Membrane Proteins at Regions Distinct from Their Sorting Sequences

Marc Fransen, Tine Wylin, Chantal Brees, Guy P. Mannaerts, Paul P. Van Veldhoven

Mol Cell Biol. 2001 Jul; 21(13): 4413–4424. doi: 10.1128/MCB.21.13.4413-4424.2001

PMCID:: PMC87101

Abstract Article PDF–2.7M

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