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Items: 1 to 20 of 21

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Misregulation of cell cycle-dependent methylation of budding yeast CENP-A contributes to chromosomal instability
Prashant K. Mishra, Wei-Chun Au, Pedro G. Castineira, Nazrin Ali, John Stanton, Lars Boeckmann, Yoshimitsu Takahashi, Michael Costanzo, Charles Boone, Kerry S. Bloom, Peter H. Thorpe, Munira A. Basrai
Mol Biol Cell. 2023 Sep 1; 34(10): ar99. Published online 2023 Aug 17. doi: 10.1091/mbc.E23-03-0108
PMCID:
PMC10551700
AbstractArticlePDF–3.7M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs
Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen
PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319
PMCID:
PMC5922528
AbstractArticlePDF–7.1M
6.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
7.
A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning
Koray Kırlı, Samir Karaca, Heinz Jürgen Dehne, Matthias Samwer, Kuan Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich
eLife. 2015; 4: e11466. Published online 2015 Dec 17. doi: 10.7554/eLife.11466
PMCID:
PMC4764573
AbstractArticlePDF–5.7M
8.
Crystallization and biochemical characterization of the human spliceosomal Aar2–Prp8RNaseH complex
Karine Santos, Marco Preussner, Anna Christina Heroven, Gert Weber
Acta Crystallogr F Struct Biol Commun. 2015 Nov 1; 71(Pt 11): 1421–1428. Published online 2015 Oct 23. doi: 10.1107/S2053230X15019202
PMCID:
PMC4631593
AbstractArticlePDF–1.2M
9.
Structural Basis of Brr2-Prp8 Interactions and Implications for U5 snRNP Biogenesis and the Spliceosome Active Site
Thi Hoang Duong Nguyen, Jade Li, Wojciech P. Galej, Hiroyuki Oshikane, Andrew J. Newman, Kiyoshi Nagai
Structure. 2013 Jun 4; 21(6): 910–919. doi: 10.1016/j.str.2013.04.017
PMCID:
PMC3677097
AbstractArticle
10.
Crystal structure of Prp8 reveals active site cavity of the spliceosome
Wojciech P. Galej, Chris Oubridge, Andrew J. Newman, Kiyoshi Nagai
Nature. Author manuscript; available in PMC 2013 Jul 31.
Published in final edited form as: Nature. 2013 Jan 31; 493(7434): 638–643. Published online 2013 Jan 23. doi: 10.1038/nature11843
PMCID:
PMC3672837
AbstractArticlePDF–3.2M
11.
Structural basis for dual roles of Aar2p in U5 snRNP assembly
Gert Weber, Vanessa F. Cristão, Karine F. Santos, Sina Mozaffari Jovin, Anna C. Heroven, Nicole Holton, Reinhard Lührmann, Jean D. Beggs, Markus C. Wahl
Genes Dev. 2013 Mar 1; 27(5): 525–540. doi: 10.1101/gad.213207.113
PMCID:
PMC3605466
AbstractArticlePDF–2.1M
12.
Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork
Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter
G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754
PMCID:
PMC3564987
AbstractArticlePDF–2.3M
13.
Mechanism for Aar2p function as a U5 snRNP assembly factor
Gert Weber, Vanessa F. Cristão, Flavia de L. Alves, Karine F. Santos, Nicole Holton, Juri Rappsilber, Jean D. Beggs, Markus C. Wahl
Genes Dev. 2011 Aug 1; 25(15): 1601–1612. doi: 10.1101/gad.635911
PMCID:
PMC3182018
AbstractArticlePDF–1.5M
14.
Composition of yeast snRNPs and snoRNPs in the absence of trimethylguanosine caps reveals nuclear cap binding protein as a gained U1 component implicated in the cold-sensitivity of tgs1Δ cells
Beate Schwer, Hediye Erdjument-Bromage, Stewart Shuman
Nucleic Acids Res. 2011 Aug; 39(15): 6715–6728. Published online 2011 May 10. doi: 10.1093/nar/gkr279
PMCID:
PMC3159458
AbstractArticlePDF–8.4M
15.
Proteasome Nuclear Activity Affects Chromosome Stability by Controlling the Turnover of Mms22, a Protein Important for DNA Repair
Shay Ben-Aroya, Neta Agmon, Karen Yuen, Teresa Kwok, Kirk McManus, Martin Kupiec, Philip Hieter
PLoS Genet. 2010 Feb; 6(2): e1000852. Published online 2010 Feb 19. doi: 10.1371/journal.pgen.1000852
PMCID:
PMC2824753
AbstractArticlePDF–999K
16.
prp8 mutations that cause human Retinitis pigmentosa lead to a U5 snRNP maturation defect in yeast
Kum-Loong Boon, Richard J. Grainger, Parastoo Ehsani, J. David Barrass, Tatsiana Auchynnikava, Chris F. Inglehearn, Jean D. Beggs
Nat Struct Mol Biol. Author manuscript; available in PMC 2008 Nov 19.
Published in final edited form as: Nat Struct Mol Biol. 2007 Nov; 14(11): 1077–1083. Published online 2007 Oct 14. doi: 10.1038/nsmb1303
PMCID:
PMC2584834
AbstractArticlePDF–1.5M
17.
Inhibition of a spliceosome turnover pathway suppresses splicing defects
Shatakshi Pandit, Bert Lynn, Brian C. Rymond
Proc Natl Acad Sci U S A. 2006 Sep 12; 103(37): 13700–13705. Published online 2006 Aug 31. doi: 10.1073/pnas.0603188103
PMCID:
PMC1564266
AbstractArticlePDF–736K
18.
Prp8p dissection reveals domain structure and protein interaction sites
KUM-LOONG BOON, CHRISTINE M. NORMAN, RICHARD J. GRAINGER, ANDREW J. NEWMAN, JEAN D. BEGGS
RNA. 2006 Feb; 12(2): 198–205. doi: 10.1261/rna.2281306
PMCID:
PMC1370899
AbstractArticlePDF–447K
19.
The yeast U5 snRNP coisolated with the U1 snRNP has an unexpected protein composition and includes the splicing factor Aar2p.
A Gottschalk, B Kastner, R Lührmann, P Fabrizio
RNA. 2001 Nov; 7(11): 1554–1565.
PMCID:
PMC1370198
SummaryPDF–1.2M
20.
Complete DNA sequence of yeast chromosome II.
H Feldmann, M Aigle, G Aljinovic, B André, M C Baclet, C Barthe, A Baur, A M Bécam, N Biteau, E Boles, et al.
EMBO J. 1994 Dec 15; 13(24): 5795–5809. doi: 10.1002/j.1460-2075.1994.tb06923.x
PMCID:
PMC395553
SummaryPage BrowsePDF–3.1M

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