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Select item 101516151.

Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein–protein interactions in the human cell

Tara K. Bartolec, Xabier Vázquez-Campos, Alexander Norman, Clement Luong, Marcus Johnson, Richard J. Payne, Marc R. Wilkins, Joel P. Mackay, Jason K. K. Low

Proc Natl Acad Sci U S A. 2023 Apr 25; 120(17): e2219418120. Published online 2023 Apr 18. doi: 10.1073/pnas.2219418120

PMCID:: PMC10151615

Abstract Article PDF–2.9M

Select item 101488472.

Prenatal phthalate exposure and cord blood DNA methylation

Jooah Lee, Jeeyoung Kim, Sabrina Shafi Zinia, Jaehyun Park, Sungho Won, Woo Jin Kim

Sci Rep. 2023; 13: 7046. Published online 2023 Apr 29. doi: 10.1038/s41598-023-33002-8

PMCID:: PMC10148847

Abstract Article PDF–1.1M

Select item 94375633.

SMYD3 Impedes Small Cell Lung Cancer Sensitivity to Alkylation Damage through RNF113A Methylation–Phosphorylation Cross-talk

Valentina Lukinović, Simone Hausmann, Gael S. Roth, Clement Oyeniran, Tanveer Ahmad, Ning Tsao, Joshua R. Brickner, Alexandre G. Casanova, Florent Chuffart, Ana Morales Benitez, Jessica Vayr, Rebecca Rodell, Marianne Tardif, Pascal W.T.C. Jansen, Yohann Couté, Michiel Vermeulen, Pierre Hainaut, Pawel K. Mazur, Nima Mosammaparast, Nicolas Reynoird

Cancer Discov. 2022 Sep 2; 12(9): 2158–2179. Published online 2022 Jul 12. doi: 10.1158/2159-8290.CD-21-0205

PMCID:: PMC9437563

Abstract Article PDF–9.5M

Select item 89589034.

Chemerin regulates formation and function of brown adipose tissue: Ablation results in increased insulin resistance with high fat challenge and aging

Yiqiang Zhang, Wen-Jun Shen, Shuo Qiu, Pinglin Yang, Garrett Dempsey, Lei Zhao, Qin Zhou, Xiao Hao, Dachuan Dong, Andreas Stahl, Fredric B. Kraemer, Lawrence L. Leung, John Morser

FASEB J. Author manuscript; available in PMC 2022 Mar 28.

Published in final edited form as: FASEB J. 2021 Jul; 35(7): e21687. doi: 10.1096/fj.202100156R

PMCID:: PMC8958903

Abstract Article PDF–3.3M

Select item 81650305.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 71699836.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 67835437.

Integrated genome-wide methylation and expression analyses reveal functional predictors of response to antidepressants

Chelsey Ju, Laura M. Fiori, Raoul Belzeaux, Jean-Francois Theroux, Gary Gang Chen, Zahia Aouabed, Pierre Blier, Faranak Farzan, Benicio N. Frey, Peter Giacobbe, Raymond W. Lam, Francesco Leri, Glenda M. MacQueen, Roumen Milev, Daniel J Müller, Sagar V. Parikh, Susan Rotzinger, Claudio N. Soares, Rudolf Uher, Qingqin Li, Jane A. Foster, Sidney H. Kennedy, Gustavo Turecki

Transl Psychiatry. 2019; 9: 254. Published online 2019 Oct 8. doi: 10.1038/s41398-019-0589-0

PMCID:: PMC6783543

Abstract Article PDF–938K

Select item 59271088.

Microarray Analysis of Gene‐expression Profiles in Diffuse Large B‐cell Lymphoma: Identification of Genes Related to Disease Progression

Mieko Nishiu, Rempei Yanagawa, Shin‐ichi Nakatsuka, Masayuki Yao, Tatsuhiko Tsunoda, Yusuke Nakamura, Katsuyuki Aozasa

Jpn J Cancer Res. 2002 Aug; 93(8): 894–901. doi: 10.1111/j.1349-7006.2002.tb01335.x

PMCID:: PMC5927108

Summary PDF–7.0M

Select item 55316119.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 541023810.

Prognostic significance of serum chemerin levels in patients with non-small cell lung cancer

Chun-Hua Xu, Yang Yang, Yu-Chao Wang, Jun Yan, Li-Hua Qian

Oncotarget. 2017 Apr 4; 8(14): 22483–22489. Published online 2017 Feb 1. doi: 10.18632/oncotarget.14956

PMCID:: PMC5410238

Abstract Article PDF–1.3M

Select item 505372811.

A new role of the Rac-GAP β2-chimaerin in cell adhesion reveals opposite functions in breast cancer initiation and tumor progression

Victoria Casado-Medrano, Laura Barrio-Real, Ginesa García-Rostán, Matti Baumann, Oliver Rocks, María J. Caloca

Oncotarget. 2016 May 10; 7(19): 28301–28319. Published online 2016 Apr 5. doi: 10.18632/oncotarget.8597

PMCID:: PMC5053728

Abstract Article PDF–15M

Select item 467323512.

Comprehensive molecular pathology analysis of small bowel adenocarcinoma reveals novel targets with potential for clinical utility

Muhammad A. Alvi, Darragh G. McArt, Paul Kelly, Marc-Aurel Fuchs, Matthew Alderdice, Clare M. McCabe, Victoria Bingham, Claire McGready, Shailesh Tripathi, Frank Emmert-Streib, Maurice B. Loughrey, Stephen McQuaid, Perry Maxwell, Peter W. Hamilton, Richard Turkington, Jacqueline A. James, Richard H. Wilson, Manuel Salto-Tellez

Oncotarget. 2015 Aug 28; 6(25): 20863–20874. Published online 2015 Jul 30. doi: 10.18632/oncotarget.4576

PMCID:: PMC4673235

Abstract Article PDF–1.8M

Select item 438092813.

Phospho-tyrosine dependent protein–protein interaction network

Arndt Grossmann, Nouhad Benlasfer, Petra Birth, Anna Hegele, Franziska Wachsmuth, Luise Apelt, Ulrich Stelzl

Mol Syst Biol. 2015 Mar; 11(3): 0794. Published online 2015 Mar 26. doi: 10.15252/msb.20145968

PMCID:: PMC4380928

Abstract Article PDF–1.9M

Select item 410995814.

Integrative Genomic and Transcriptomic Analysis Identified Candidate Genes Implicated in the Pathogenesis of Hepatosplenic T-Cell Lymphoma

Julio Finalet Ferreiro, Leila Rouhigharabaei, Helena Urbankova, Jo-Anne van der Krogt, Lucienne Michaux, Shashirekha Shetty, Laszlo Krenacs, Thomas Tousseyn, Pascale De Paepe, Anne Uyttebroeck, Gregor Verhoef, Tom Taghon, Peter Vandenberghe, Jan Cools, Iwona Wlodarska

PLoS One. 2014; 9(7): e102977. Published online 2014 Jul 24. doi: 10.1371/journal.pone.0102977

PMCID:: PMC4109958

Abstract Article PDF–2.0M

Select item 352258715.

Novel Genetic Loci Identified for the Pathophysiology of Childhood Obesity in the Hispanic Population

Anthony G. Comuzzie, Shelley A. Cole, Sandra L. Laston, V. Saroja Voruganti, Karin Haack, Richard A. Gibbs, Nancy F. Butte

PLoS One. 2012; 7(12): e51954. Published online 2012 Dec 14. doi: 10.1371/journal.pone.0051954

PMCID:: PMC3522587

Abstract Article PDF–130K

Select item 334993816.

A Bayesian approach to genetic association studies with family-based designs

Melissa G. Naylor, Scott T. Weiss, Christoph Lange

Genet Epidemiol. Author manuscript; available in PMC 2012 May 11.

Published in final edited form as: Genet Epidemiol. 2010 Sep; 34(6): 569–574. doi: 10.1002/gepi.20513

PMCID:: PMC3349938

Abstract Article PDF–620K

Select item 319805517.

CPVL/CHN2 Genetic Variant Is Associated With Diabetic Retinopathy in Chinese Type 2 Diabetic Patients

Cheng Hu, Rong Zhang, Weihui Yu, Jie Wang, Congrong Wang, Can Pang, Xiaojing Ma, Yuqian Bao, Kunsan Xiang, Weiping Jia

Diabetes. 2011 Nov; 60(11): 3085–3089. Published online 2011 Oct 17. doi: 10.2337/db11-0028

PMCID:: PMC3198055

Abstract Article PDF–521K

Select item 317805918.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 291107119.

Replication Study for the Association Between Four Loci Identified by a Genome-Wide Association Study on European American Subjects With Type 1 Diabetes and Susceptibility to Diabetic Nephropathy in Japanese Subjects With Type 2 Diabetes

Shiro Maeda, Shin-ichi Araki, Tetsuya Babazono, Masao Toyoda, Tomoya Umezono, Koichi Kawai, Masahito Imanishi, Takashi Uzu, Hirotaka Watada, Daisuke Suzuki, Atsunori Kashiwagi, Yasuhiko Iwamoto, Kohei Kaku, Ryuzo Kawamori, Yusuke Nakamura

Diabetes. 2010 Aug; 59(8): 2075–2079. Published online 2010 May 11. doi: 10.2337/db10-0067

PMCID:: PMC2911071

Abstract Article PDF–69K

Select item 290915020.

Generalist genes analysis of DNA markers associated with mathematical ability and disability reveals shared influence across ages and abilities

Sophia J Docherty, Yulia Kovas, Stephen A Petrill, Robert Plomin

BMC Genet. 2010; 11: 61. Published online 2010 Jul 5. doi: 10.1186/1471-2156-11-61

PMCID:: PMC2909150

Abstract Article PDF–587K

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