PMC Links for GEO Profiles (Select 55736349) - PMC

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 80090484.

Impact of cytosine methylation on DNA binding specificities of human transcription factors

Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush K. Das, Teemu Kivioja, Kashyap Dave, Fan Zhong, Kazuhiro R. Nitta, Minna Taipale, Alexander Popov, Paul A. Ginno, Silvia Domcke, Jian Yan, Dirk Schübeler, Charles Vinson, Jussi Taipale

Science. Author manuscript; available in PMC 2021 Mar 30.

Published in final edited form as: Science. 2017 May 5; 356(6337): eaaj2239. doi: 10.1126/science.aaj2239

PMCID:: PMC8009048

Abstract Article PDF–2.6M

Select item 74454035.

HOXD3 was negatively regulated by YY1 recruiting HDAC1 to suppress progression of hepatocellular carcinoma cells via ITGA2 pathway

Lumin Wang, Yi Gao, Xiaoge Zhao, Chen Guo, Xiaofei Wang, Yang Yang, Cong Han, Lingyu Zhao, Yannan Qin, Liying Liu, Chen Huang, Wenjing Wang

Cell Prolif. 2020 Aug; 53(8): e12835. Published online 2020 Jun 17. doi: 10.1111/cpr.12835

PMCID:: PMC7445403

Abstract Article PDF–4.1M

Select item 71699836.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 63974977.

Nuclear lncRNA HOXD-AS1 suppresses colorectal carcinoma growth and metastasis via inhibiting HOXD3-induced integrin β3 transcriptional activating and MAPK/AKT signalling

Min-Hui Yang, Li Zhao, Lan Wang, Wen Ou-Yang, Sha-Sha Hu, Wen-Lu Li, Mei-Ling Ai, Yi-Qing Wang, Yue Han, Ting-Ting Li, Yan-Qing Ding, Shuang Wang

Mol Cancer. 2019; 18: 31. Published online 2019 Mar 1. doi: 10.1186/s12943-019-0955-9

PMCID:: PMC6397497

Abstract Article PDF–6.9M

Select item 61666828.

Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei

Domenico Fasci, Hugo van Ingen, Richard A. Scheltema, Albert J. R. Heck

Mol Cell Proteomics. 2018 Oct; 17(10): 2018–2033. Published online 2018 Jul 18. doi: 10.1074/mcp.RA118.000924

PMCID:: PMC6166682

Abstract Article PDF–3.8M

Select item 57991599.

HOXD3 targeted by miR-203a suppresses cell metastasis and angiogenesis through VEGFR in human hepatocellular carcinoma cells

Lumin Wang, Dongdong Tong, Qingqing Guo, Xiaofei Wang, Fei Wu, Qian Li, Juan Yang, Lingyu Zhao, Yannan Qin, Yingxun Liu, Chen Huang

Sci Rep. 2018; 8: 2431. Published online 2018 Feb 5. doi: 10.1038/s41598-018-20859-3

PMCID:: PMC5799159

Abstract Article PDF–15M

Select item 553161110.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 521672411.

EGR1 mediates miR-203a suppress the hepatocellular carcinoma cells progression by targeting HOXD3 through EGFR signaling pathway

Lumin Wang, Hongfei Sun, Xiaofei Wang, Ni Hou, Lingyu Zhao, Dongdong Tong, Kang He, Yang Yang, Tusheng Song, Jun Yang, Chen Huang

Oncotarget. 2016 Jul 19; 7(29): 45302–45316. Published online 2016 May 26. doi: 10.18632/oncotarget.9605

PMCID:: PMC5216724

Abstract Article PDF–10M

Select item 502287112.

RNAi-mediated HOXD3 knockdown inhibits growth in human RKO cells

Fangjun Chen, Guoping Sun, Jun Peng

Oncol Rep. 2016 Oct; 36(4): 1793–1798. Published online 2016 Aug 2. doi: 10.3892/or.2016.4993

PMCID:: PMC5022871

Abstract Article PDF–657K

Select item 484875813.

An inter‐species protein–protein interaction network across vast evolutionary distance

Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal

Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484

PMCID:: PMC4848758

Abstract Article PDF–2.1M

Select item 463632414.

Identification of HOXD4 Mutations in Spinal Extradural Arachnoid Cyst

Yoji Ogura, Noriko Miyake, Ikuyo Kou, Aritoshi Iida, Masahiro Nakajima, Kazuki Takeda, Shunsuke Fujibayashi, Masaaki Shiina, Eijiro Okada, Yoshiaki Toyama, Akio Iwanami, Ken Ishii, Kazuhiro Ogata, Hiroshi Asahara, Naomichi Matsumoto, Masaya Nakamura, Morio Matsumoto, Shiro Ikegawa

PLoS One. 2015; 10(11): e0142126. Published online 2015 Nov 6. doi: 10.1371/journal.pone.0142126

PMCID:: PMC4636324

Abstract Article PDF–652K

Select item 428532815.

Correlation of HOXD3 promoter hypermethylation with clinical and pathologic features in screening prostate biopsies

Leonard N Chen, Rachel S Rubin, Eugide Othepa, Caroline Cer, Elizabeth Yun, Raghunath P Agarwal, Brian T Collins, Kevin McGeagh, John Pahira, Guarav Bandi, Keith Kowalczyk, Deepak Kumar, Anatoly Dritschilo, Sean P Collins, David G Bostwick, John H Lynch, Simeng Suy

Prostate. 2014 May; 74(7): 714–721. Published online 2014 Feb 21. doi: 10.1002/pros.22790

PMCID:: PMC4285328

Abstract Article PDF–512K

Select item 408243716.

Validation study of genes with hypermethylated promoter regions associated with prostate cancer recurrence

Marni Stott-Miller, Shanshan Zhao, Jonathan L. Wright, Suzanne Kolb, Marina Bibikova, Brandy Klotzle, Elaine A. Ostrander, Jian-Bing Fan, Ziding Feng, Janet L. Stanford

Cancer Epidemiol Biomarkers Prev. Author manuscript; available in PMC 2015 Jul 1.

Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2014 Jul; 23(7): 1331–1339. Published online 2014 Apr 9. doi: 10.1158/1055-9965.EPI-13-1000

PMCID:: PMC4082437

Abstract Article PDF–535K

Select item 400781017.

Polymorphisms in the HOXD4 gene are not associated with peak bone mineral density in Chinese nuclear families

Hao Zhang, Jin-wei He, Gao Gao, Hua Yue, Jin-bo Yu, Wei-wei Hu, Jie-mei Gu, Yun-qiu Hu, Miao Li, Wen-zhen Fu, Yu-juan Liu, Zhen-lin Zhang

Acta Pharmacol Sin. 2010 Aug; 31(8): 977–983. Published online 2010 Aug 5. doi: 10.1038/aps.2010.91

PMCID:: PMC4007810

Abstract Article PDF–638K

Select item 356108418.

Loci Associated with N-Glycosylation of Human Immunoglobulin G Show Pleiotropy with Autoimmune Diseases and Haematological Cancers

Gordan Lauc, Jennifer E. Huffman, Maja Pučić, Lina Zgaga, Barbara Adamczyk, Ana Mužinić, Mislav Novokmet, Ozren Polašek, Olga Gornik, Jasminka Krištić, Toma Keser, Veronique Vitart, Blanca Scheijen, Hae-Won Uh, Mariam Molokhia, Alan Leslie Patrick, Paul McKeigue, Ivana Kolčić, Ivan Krešimir Lukić, Olivia Swann, Frank N. van Leeuwen, L. Renee Ruhaak, Jeanine J. Houwing-Duistermaat, P. Eline Slagboom, Marian Beekman, Anton J. M. de Craen, André M. Deelder, Qiang Zeng, Wei Wang, Nicholas D. Hastie, Ulf Gyllensten, James F. Wilson, Manfred Wuhrer, Alan F. Wright, Pauline M. Rudd, Caroline Hayward, Yurii Aulchenko, Harry Campbell, Igor Rudan

PLoS Genet. 2013 Jan; 9(1): e1003225. Published online 2013 Jan 31. doi: 10.1371/journal.pgen.1003225

PMCID:: PMC3561084

Abstract Article PDF–1.0M

Select item 351415919.

Protein interactions of the transcription factor Hoxa1

Barbara Lambert, Julie Vandeputte, Sophie Remacle, Isabelle Bergiers, Nicolas Simonis, Jean-Claude Twizere, Marc Vidal, René Rezsohazy

BMC Dev Biol. 2012; 12: 29. Published online 2012 Oct 22. doi: 10.1186/1471-213X-12-29

PMCID:: PMC3514159

Abstract Article PDF–1.6M

Select item 317805920.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

PMC

Result Filters

Article attributes

Text availability

Publication date

Custom date range

Research Funder

Additional filters

Display Settings:

Send to:

Links from GEO Profiles

Items: 1 to 20 of 41

Display Settings:

Send to:

Supplemental Content

Find related data

Recent activity