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Items: 1 to 20 of 22

1.
A pan-cancer analysis of the role of HOXD1, HOXD3, and HOXD4 and validation in renal cell carcinoma
Lumin Wang, Xiaofei Wang, Haifeng Sun, Wenjing Wang, Li Cao
Aging (Albany NY) 2023 Oct 15; 15(19): 10746–10766. Published online 2023 Oct 12. doi: 10.18632/aging.205116
PMCID:
PMC10599751
AbstractArticlePDF–5.1M
2.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
3.
Impact of cytosine methylation on DNA binding specificities of human transcription factors
Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush K. Das, Teemu Kivioja, Kashyap Dave, Fan Zhong, Kazuhiro R. Nitta, Minna Taipale, Alexander Popov, Paul A. Ginno, Silvia Domcke, Jian Yan, Dirk Schübeler, Charles Vinson, Jussi Taipale
Science. Author manuscript; available in PMC 2021 Mar 30.
Published in final edited form as: Science. 2017 May 5; 356(6337): eaaj2239. doi: 10.1126/science.aaj2239
PMCID:
PMC8009048
AbstractArticlePDF–2.6M
4.
A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
Nature. Author manuscript; available in PMC 2020 Oct 8.
Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x
PMCID:
PMC7169983
AbstractArticlePDF–5.4M
5.
Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei
Domenico Fasci, Hugo van Ingen, Richard A. Scheltema, Albert J. R. Heck
Mol Cell Proteomics. 2018 Oct; 17(10): 2018–2033. Published online 2018 Jul 18. doi: 10.1074/mcp.RA118.000924
PMCID:
PMC6166682
AbstractArticlePDF–3.8M
6.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
7.
Identification of HOXD4 Mutations in Spinal Extradural Arachnoid Cyst
Yoji Ogura, Noriko Miyake, Ikuyo Kou, Aritoshi Iida, Masahiro Nakajima, Kazuki Takeda, Shunsuke Fujibayashi, Masaaki Shiina, Eijiro Okada, Yoshiaki Toyama, Akio Iwanami, Ken Ishii, Kazuhiro Ogata, Hiroshi Asahara, Naomichi Matsumoto, Masaya Nakamura, Morio Matsumoto, Shiro Ikegawa
PLoS One. 2015; 10(11): e0142126. Published online 2015 Nov 6. doi: 10.1371/journal.pone.0142126
PMCID:
PMC4636324
AbstractArticlePDF–652K
8.
Polymorphisms in the HOXD4 gene are not associated with peak bone mineral density in Chinese nuclear families
Hao Zhang, Jin-wei He, Gao Gao, Hua Yue, Jin-bo Yu, Wei-wei Hu, Jie-mei Gu, Yun-qiu Hu, Miao Li, Wen-zhen Fu, Yu-juan Liu, Zhen-lin Zhang
Acta Pharmacol Sin. 2010 Aug; 31(8): 977–983. Published online 2010 Aug 5. doi: 10.1038/aps.2010.91
PMCID:
PMC4007810
AbstractArticlePDF–638K
9.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
10.
An atlas of combinatorial transcriptional regulation in mouse and man
The FANTOM consortium and RIKEN Omics Science Center
Cell. Author manuscript; available in PMC 2011 Mar 5.
Published in final edited form as: Cell. 2010 Mar 5; 140(5): 744–752. doi: 10.1016/j.cell.2010.01.044
Correction in:
volume 141 on page 369
PMCID:
PMC2836267
AbstractArticlePDF–2.2M
11.
Altered Transmission of HOX and Apoptotic SNPs Identify a Potential Common Pathway for Clubfoot
Audrey R. Ester, Katelyn S. Weymouth, Amber Burt, Carol Wise, Allison Scott, Christina A Gurnett, Matthew B. Dobbs, Susan H. Blanton, Jacqueline T. Hecht
Am J Med Genet A. Author manuscript; available in PMC 2010 Dec 1.
Published in final edited form as: Am J Med Genet A. 2009 Dec; 149A(12): 2745–2752. doi: 10.1002/ajmg.a.33130
PMCID:
PMC2795347
AbstractArticlePDF–394K
12.
High-Density Association Study of 383 Candidate Genes for Volumetric BMD at the Femoral Neck and Lumbar Spine Among Older Men
Laura M. Yerges, Lambertus Klei, Jane A. Cauley, Kathryn Roeder, Candace M. Kammerer, Susan P. Moffett, Kristine E. Ensrud, Cara S. Nestlerode, Lynn M. Marshall, Andrew R. Hoffman, Cora Lewis, Thomas F. Lang, Elizabeth Barrett-Connor, Robert E. Ferrell, Eric S. Orwoll, Joseph M. Zmuda
J Bone Miner Res. 2009 Dec; 24(12): 2039–2049. Published online 2009 May 18. doi: 10.1359/JBMR.090524
PMCID:
PMC2791518
AbstractArticlePDF–759K
13.
Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells
Yuliang Tan, Bo Zhang, Tao Wu, Geir Skogerbø, Xiaopeng Zhu, Xiangqian Guo, Shunmin He, Runsheng Chen
BMC Mol Biol. 2009; 10: 12. Published online 2009 Feb 22. doi: 10.1186/1471-2199-10-12
PMCID:
PMC2680403
AbstractArticlePDF–875K
14.
Monodactylous limbs and abnormal genitalia are associated with hemizygosity for the human 2q31 region that includes the HOXD cluster.
M Del Campo, M C Jones, A N Veraksa, C J Curry, K L Jones, J T Mascarello, Z Ali-Kahn-Catts, T Drumheller, W McGinnis
Am J Hum Genet. 1999 Jul; 65(1): 104–110. doi: 10.1086/302467
PMCID:
PMC1378080
SummaryPDF–414K
15.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
16.
HOX4 genes encode transcription factors with potential auto- and cross-regulatory capacities.
V Zappavigna, A Renucci, J C Izpisúa-Belmonte, G Urier, C Peschle, D Duboule
EMBO J. 1991 Dec; 10(13): 4177–4187. doi: 10.1002/j.1460-2075.1991.tb04996.x
PMCID:
PMC453170
SummaryPage BrowsePDF–2.6M
17.
The thyroid transcription factor-1 gene is a candidate target for regulation by Hox proteins.
S Guazzi, R Lonigro, L Pintonello, E Boncinelli, R Di Lauro, F Mavilio
EMBO J. 1994 Jul 15; 13(14): 3339–3347. doi: 10.1002/j.1460-2075.1994.tb06636.x
PMCID:
PMC395231
SummaryPage BrowsePDF–2.3M
18.
A 117-kb Microdeletion Removing HOXD9–HOXD13 and EVX2 Causes Synpolydactyly
Frances R. Goodman, Frank Majewski, Amanda L. Collins, Peter J. Scambler
Am J Hum Genet. 2002 Feb; 70(2): 547–555. Published online 2002 Jan 3. doi: 10.1086/338921
PMCID:
PMC384929
AbstractArticlePDF–512K
19.
Molecular mechanisms underlying the expression of the human HOX-5.1 gene.
L Cianetti, A Di Cristofaro, V Zappavigna, L Bottero, G Boccoli, U Testa, G Russo, E Boncinelli, C Peschle
Nucleic Acids Res. 1990 Aug 11; 18(15): 4361–4368. doi: 10.1093/nar/18.15.4361
PMCID:
PMC331252
SummaryPage BrowsePDF–2.0M
20.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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