PMC Links for GEO Profiles (Select 64432244) - PMC

Select item 110168441.

Ubiquitin E3 Ligase FBXO9 Regulates Pluripotency by Targeting DPPA5 for Ubiquitylation and Degradation

Samantha A Swenson, Kasidy K Dobish, Hendrik C Peters, C Bea Winship, R Willow Hynes-Smith, Mika Caplan, Karli J Wittorf, Gargi Ghosal, Shannon M Buckley

Stem Cells. 2024 Apr; 42(4): 317–328. Published online 2024 Jan 16. doi: 10.1093/stmcls/sxae004

PMCID:: PMC11016844

Abstract Article PDF–6.8M

Select item 73129862.

Minor Splicing Factors Zrsr1 and Zrsr2 Are Essential for Early Embryo Development and 2-Cell-Like Conversion

Isabel Gómez-Redondo, Priscila Ramos-Ibeas, Eva Pericuesta, Raúl Fernández-González, Ricardo Laguna-Barraza, Alfonso Gutiérrez-Adán

Int J Mol Sci. 2020 Jun; 21(11): 4115. Published online 2020 Jun 9. doi: 10.3390/ijms21114115

PMCID:: PMC7312986

Abstract Article PDF–1.8M

Select item 48209083.

Essential role of the TFIID subunit TAF4 in murine embryogenesis and embryonic stem cell differentiation

Diana Langer, Igor Martianov, Daniel Alpern, Muriel Rhinn, Céline Keime, Pascal Dollé, Gabrielle Mengus, Irwin Davidson

Nat Commun. 2016; 7: 11063. Published online 2016 Mar 30. doi: 10.1038/ncomms11063

PMCID:: PMC4820908

Abstract Article PDF–4.0M

Select item 42657584.

Interaction of NANOS2 and NANOS3 with different components of the CNOT complex may contribute to the functional differences in mouse male germ cells

Atsushi Suzuki, Yuki Niimi, Yumiko Saga

Biol Open. 2014 Dec 15; 3(12): 1207–1216. Published online 2014 Nov 21. doi: 10.1242/bio.20149308

PMCID:: PMC4265758

Abstract Article PDF–1.3M

Select item 36302655.

Interaction between DMRT1 function and genetic background modulates signaling and pluripotency to control tumor susceptibility in the fetal germ line

Anthony D. Krentz, Mark W. Murphy, Teng Zhang, Aaron L. Sarver, Sanjay Jain, Michael D. Griswold, Vivian J. Bardwell, David Zarkower

Dev Biol. Author manuscript; available in PMC 2014 May 1.

Published in final edited form as: Dev Biol. 2013 May 1; 377(1): 67–78. Published online 2013 Mar 6. doi: 10.1016/j.ydbio.2013.02.014

PMCID:: PMC3630265

Abstract Article PDF–2.3M

Select item 34793436.

Placental PPARγ Regulates Spatiotemporally Diverse Genes And A Unique Metabolic Network

Tali Shalom-Barak, Xiaowen Zhang, Tianjiao Chu, W. Timothy Schaiff, Janardan K. Reddy, Jianming Xu, Yoel Sadovsky, Yaacov Barak

Dev Biol. Author manuscript; available in PMC 2013 Dec 1.

Published in final edited form as: Dev Biol. 2012 Dec 1; 372(1): 143–155. Published online 2012 Aug 29. doi: 10.1016/j.ydbio.2012.08.021

PMCID:: PMC3479343

Abstract Article PDF–3.8M

Select item 31894927.

Three-dimensional visualisation of testis cord morphogenesis, a novel tubulogenic mechanism in development

Alexander N. Combes, Emmanuelle Lesieur, Vincent R. Harley, Andrew H. Sinclair, Melissa H. Little, Dagmar Wilhelm, Peter Koopman

Dev Dyn. Author manuscript; available in PMC 2011 Oct 9.

Published in final edited form as: Dev Dyn. 2009 May; 238(5): 1033–1041. doi: 10.1002/dvdy.21925

PMCID:: PMC3189492

Abstract Article PDF–2.5M

Select item 31780598.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 31217359.

Deterministic and Stochastic Allele Specific Gene Expression in Single Mouse Blastomeres

Fuchou Tang, Catalin Barbacioru, Ellen Nordman, Siqin Bao, Caroline Lee, Xiaohui Wang, Brian B. Tuch, Edith Heard, Kaiqin Lao, M. Azim Surani

PLoS One. 2011; 6(6): e21208. Published online 2011 Jun 23. doi: 10.1371/journal.pone.0021208

PMCID:: PMC3121735

Abstract Article PDF–1.0M

Select item 302253410.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 283221711.

E2F4 cooperates with pRB in the development of extra-embryonic tissues

Eunice Y. Lee, Tina L. Yuan, Paul S. Danielian, Julie C. West, Jacqueline A. Lees

Dev Biol. Author manuscript; available in PMC 2010 Aug 1.

Published in final edited form as: Dev Biol. 2009 Aug 1; 332(1): 104–115. Published online 2009 May 9. doi: 10.1016/j.ydbio.2009.05.541

PMCID:: PMC2832217

Abstract Article PDF–7.1M

Select item 277071512.

Uncovering early response of gene regulatory networks in ES cells by systematic induction of transcription factors

Akira Nishiyama, Li Xin, Alexei A. Sharov, Marshall Thomas, Gregory Mowrer, Emily Meyers, Yulan Piao, Samir Mehta, Sarah Yee, Yuhki Nakatake, Carole Stagg, Lioudmila Sharova, Lina S. Correa-Cerro, Uwem Bassey, Hien Hoang, Eugene Kim, Richard Tapnio, Yong Qian, Dawood Dudekula, Michal Zalzman, Manxiang Li, Geppino Falco, Hsih-Te Yang, Sung-Lim Lee, Manuela Monti, Ilaria Stanghellini, Md. Nurul Islam, Ramaiah Nagaraja, Ilya Goldberg, Weidong Wang, Dan L. Longo, David Schlessinger, Minoru S. H. Ko

Cell Stem Cell. Author manuscript; available in PMC 2010 Oct 2.

Published in final edited form as: Cell Stem Cell. 2009 Oct 2; 5(4): 420–433. doi: 10.1016/j.stem.2009.07.012

PMCID:: PMC2770715

Abstract Article PDF–2.6M

Select item 142027113.

Identification and targeted disruption of the mouse gene encoding ESG1 (PH34/ECAT2/DPPA5)

Hisayuki Amano, Ken Itakura, Masayoshi Maruyama, Tomoko Ichisaka, Masato Nakagawa, Shinya Yamanaka

BMC Dev Biol. 2006; 6: 11. Published online 2006 Feb 28. doi: 10.1186/1471-213X-6-11

PMCID:: PMC1420271

Abstract Article PDF–457K

Select item 31099214.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098015.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 28355416.

Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention

Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands

Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100

Correction in:: Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.

PMCID:: PMC283554

Abstract Article PDF–481K

Select item 18757117.

Gene Expression Profiling of Embryo-Derived Stem Cells Reveals Candidate Genes Associated With Pluripotency and Lineage Specificity

Tetsuya S. Tanaka, Tilo Kunath, Wendy L. Kimber, Saied A. Jaradat, Carole A. Stagg, Masayuki Usuda, Takashi Yokota, Hitoshi Niwa, Janet Rossant, Minoru S.H. Ko

Genome Res. 2002 Dec; 12(12): 1921–1928. doi: 10.1101/gr.670002

PMCID:: PMC187571

Abstract Article PDF–588K

Select item 13924118.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 1683319.

Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray

Tetsuya S. Tanaka, Saied A. Jaradat, Meng K. Lim, George J. Kargul, Xiaohong Wang, Marija J. Grahovac, Serafino Pantano, Yuri Sano, Yulan Piao, Ramaiah Nagaraja, Hirofumi Doi, William H. Wood, III, Kevin G. Becker, Minoru S. H. Ko

Proc Natl Acad Sci U S A. 2000 Aug 1; 97(16): 9127–9132. doi: 10.1073/pnas.97.16.9127

PMCID:: PMC16833

Abstract Article PDF–847K

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