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Select item 109176601.

Genetic determinants of micronucleus formation in vivo

D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus

Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0

PMCID:: PMC10917660

Abstract Article PDF–4.8M

Select item 100051792.

Mechanism of KMT5B haploinsufficiency in neurodevelopment in humans and mice

Sarah E. Sheppard, Laura Bryant, Rochelle N. Wickramasekara, Courtney Vaccaro, Brynn Robertson, Jodi Hallgren, Jason Hulen, Cynthia J. Watson, Victor Faundes, Yannis Duffourd, Pearl Lee, M. Celeste Simon, Xavier de la Cruz, Natália Padilla, Marco Flores-Mendez, Naiara Akizu, Jacqueline Smiler, Renata Pellegrino Da Silva, Dong Li, Michael March, Abdias Diaz-Rosado, Isabella Peixoto de Barcelos, Zhao Xiang Choa, Chin Yan Lim, Christèle Dubourg, Hubert Journel, Florence Demurger, Maureen Mulhern, Cigdem Akman, Natalie Lippa, Marisa Andrews, Dustin Baldridge, John Constantino, Arie van Haeringen, Irina Snoeck-Streef, Penny Chow, Anne Hing, John M. Graham, Jr., Margaret Au, Laurence Faivre, Wei Shen, Rong Mao, Janice Palumbos, David Viskochil, William Gahl, Cynthia Tifft, Ellen Macnamara, Natalie Hauser, Rebecca Miller, Jessica Maffeo, Alexandra Afenjar, Diane Doummar, Boris Keren, Pamela Arn, Sarah Macklin-Mantia, Ilse Meerschaut, Bert Callewaert, André Reis, Christiane Zweier, Carole Brewer, Anand Saggar, Marie F. Smeland, Ajith Kumar, Frances Elmslie, Charu Deshpande, Mathilde Nizon, Benjamin Cogne, Yvette van Ierland, Martina Wilke, Marjon van Slegtenhorst, Suzanne Koudijs, Jin Yun Chen, David Dredge, Danielle Pier, Saskia Wortmann, Erik-Jan Kamsteeg, Johannes Koch, Devon Haynes, Lynda Pollack, Hannah Titheradge, Kara Ranguin, Anne-Sophie Denommé-Pichon, Sacha Weber, Rubén Pérez de la Fuente, Jaime Sánchez del Pozo, Jose Miguel Lezana Rosales, Pascal Joset, Katharina Steindl, Anita Rauch, Davide Mei, Francesco Mari, Renzo Guerrini, James Lespinasse, Frédéric Tran Mau-Them, Christophe Philippe, Benjamin Dauriat, Laure Raymond, Sébastien Moutton, Anna M. Cueto-González, Tiong Yang Tan, Cyril Mignot, Sarah Grotto, Florence Renaldo, Theodore G. Drivas, Laura Hennessy, Anna Raper, Ilaria Parenti, Frank J. Kaiser, Alma Kuechler, Øyvind L. Busk, Lily Islam, Jacob A. Siedlik, Lindsay B. Henderson, Jane Juusola, Richard Person, Rhonda E. Schnur, Antonio Vitobello, Siddharth Banka, Elizabeth J. Bhoj, Holly A. F. Stessman

Sci Adv. 2023 Mar; 9(10): eade1463. Published online 2023 Mar 10. doi: 10.1126/sciadv.ade1463

PMCID:: PMC10005179

Abstract Article PDF–2.0M

Select item 97899993.

A genome-wide CRISPR screen identifies WDFY3 as a regulator of macrophage efferocytosis

Jianting Shi, Xun Wu, Ziyi Wang, Fang Li, Yujiao Meng, Rebecca M. Moore, Jian Cui, Chenyi Xue, Katherine R. Croce, Arif Yurdagul, Jr, John G. Doench, Wei Li, Konstantinos S. Zarbalis, Ira Tabas, Ai Yamamoto, Hanrui Zhang

Nat Commun. 2022; 13: 7929. Published online 2022 Dec 24. doi: 10.1038/s41467-022-35604-8

PMCID:: PMC9789999

Abstract Article PDF–3.7M

Select item 92192474.

WDFY3 mutation alters laminar position and morphology of cortical neurons

Zachary A. Schaaf, Lyvin Tat, Noemi Cannizzaro, Ralph Green, Thomas Rülicke, Simon Hippenmeyer, Konstantinos S. Zarbalis

Mol Autism. 2022; 13: 27. Published online 2022 Jun 22. doi: 10.1186/s13229-022-00508-3

Correction in:: Mol Autism. 2023; 14: 4.

PMCID:: PMC9219247

Abstract Article PDF–7.2M

Select item 86692925.

Wdfy3 regulates glycophagy, mitophagy, and synaptic plasticity

Eleonora Napoli, Alexios A Panoutsopoulos, Patricia Kysar, Nathaniel Satriya, Kira Sterling, Bradley Shibata, Denise Imai, David N Ruskin, Konstantinos S Zarbalis, Cecilia Giulivi

J Cereb Blood Flow Metab. 2021 Dec; 41(12): 3213–3231. Published online 2021 Jun 29. doi: 10.1177/0271678X211027384

PMCID:: PMC8669292

Abstract Article PDF–1.7M

Select item 83132396.

Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development

Francesco Bedogni, Robert F. Hevner

Front Mol Neurosci. 2021; 14: 686034. Published online 2021 Jul 12. doi: 10.3389/fnmol.2021.686034

PMCID:: PMC8313239

Abstract Article PDF–1.6M

Select item 79387707.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 74159918.

BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING)

Kou Motani, Hidetaka Kosako

J Biol Chem. 2020 Aug 7; 295(32): 11174–11183. Published online 2020 Jun 17. doi: 10.1074/jbc.RA120.014323

PMCID:: PMC7415991

Abstract Article PDF–2.0M

Select item 71448679.

Examining aggregates through the eyes of WDFY3/Alfy

Leora Fox, Ai Yamamoto

Autophagy. 2020; 16(5): 967–968. Published online 2020 Mar 13. doi: 10.1080/15548627.2020.1739448

PMCID:: PMC7144867

Abstract Article PDF–306K

Select item 706012310.

Huntington’s disease pathogenesis is modified in vivo by Alfy/Wdfy3 and selective macroautophagy

Leora M. Fox, Kiryung Kim, Christopher W. Johnson, Shawei Chen, Katherine R. Croce, Matheus B. Victor, Evelien Eenjes, Joan R. Bosco, Lisa K. Randolph, Ioannis Dragatsis, Joanna M. Dragich, Andrew S. Yoo, Ai Yamamoto

Neuron. Author manuscript; available in PMC 2021 Mar 4.

Published in final edited form as: Neuron. 2020 Mar 4; 105(5): 813–821.e6. Published online 2019 Dec 30. doi: 10.1016/j.neuron.2019.12.003

PMCID:: PMC7060123

Abstract Article PDF–1.7M

Select item 606393011.

Beyond autophagy: a novel role for autism-linked Wdfy3 in brain mitophagy

Eleonora Napoli, Gyu Song, Alexios Panoutsopoulos, M. Asrafuzzaman Riyadh, Gaurav Kaushik, Julian Halmai, Richard Levenson, Konstantinos S. Zarbalis, Cecilia Giulivi

Sci Rep. 2018; 8: 11348. Published online 2018 Jul 27. doi: 10.1038/s41598-018-29421-7

PMCID:: PMC6063930

Abstract Article PDF–6.9M

Select item 564508212.

Spatio-temporal profile of postynaptic interactomes integrates components of complex brain disorders

Jing Li, Wangshu Zhang, Hui Yang, Daniel P. Howrigan, Brent Wilkinson, Tade Souaiaia, Oleg V. Evgrafov, Giulio Genovese, Veronica A. Clementel, Jennifer C. Tudor, Ted Abel, James A. Knowles, Benjamin M. Neale, Kai Wang, Fengzhu Sun, Marcelo P. Coba

Nat Neurosci. Author manuscript; available in PMC 2018 Aug 1.

Published in final edited form as: Nat Neurosci. 2017 Aug; 20(8): 1150–1161. Published online 2017 Jun 26. doi: 10.1038/nn.4594

PMCID:: PMC5645082

Abstract Article PDF–2.3M

Select item 538122613.

Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function

Tingting Zhang, Wei Du, Andrew F. Wilson, Satoshi H. Namekawa, Paul R. Andreassen, Amom Ruhikanta Meetei, Qishen Pang

Sci Rep. 2017; 7: 45626. Published online 2017 Apr 5. doi: 10.1038/srep45626

PMCID:: PMC5381226

Abstract Article PDF–1.4M

Select item 503008214.

Autophagy linked FYVE (Alfy/WDFY3) is required for establishing neuronal connectivity in the mammalian brain

Joanna M Dragich, Takaaki Kuwajima, Megumi Hirose-Ikeda, Michael S Yoon, Evelien Eenjes, Joan R Bosco, Leora M Fox, Alf H Lystad, Tinmarla F Oo, Olga Yarygina, Tomohiro Mita, Satoshi Waguri, Yoshinobu Ichimura, Masaaki Komatsu, Anne Simonsen, Robert E Burke, Carol A Mason, Ai Yamamoto

eLife. 2016; 5: e14810. Published online 2016 Sep 20. doi: 10.7554/eLife.14810

PMCID:: PMC5030082

Abstract Article PDF–8.1M

Select item 500373715.

Autophagy-linked FYVE containing protein WDFY3 interacts with TRAF6 and modulates RANKL-induced osteoclastogenesis

Dennis J. Wu, Ran Gu, Ritu Sarin, Regina Zavodovskaya, Chia-Pei Chen, Blaine A. Christiansen, Iannis E. Adamopoulos

J Autoimmun. Author manuscript; available in PMC 2017 Sep 1.

Published in final edited form as: J Autoimmun. 2016 Sep; 73: 73–84. Published online 2016 Jun 18. doi: 10.1016/j.jaut.2016.06.004

Correction in:: J Autoimmun. 2017 Jul 27

PMCID:: PMC5003737

Abstract Article PDF–3.2M

Select item 415977216.

Loss of Wdfy3 in mice alters cerebral cortical neurogenesis reflecting aspects of the autism pathology

Lori A. Orosco, Adam P. Ross, Staci L. Cates, Sean E. Scott, Dennis Wu, Jiho Sohn, David Pleasure, Samuel J. Pleasure, Iannis E. Adamopoulos, Konstantinos S. Zarbalis

Nat Commun. Author manuscript; available in PMC 2015 Mar 8.

Published in final edited form as: Nat Commun. 2014; 5: 4692. Published online 2014 Sep 8. doi: 10.1038/ncomms5692

PMCID:: PMC4159772

Abstract Article PDF–2.5M

Select item 317805917.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253418.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 286724519.

The selective macroautophagic degradation of aggregated proteins requires the phosphatidylinositol 3-phosphate binding protein Alfy

Maria Filimonenko, Pauline Isakson, Kim D. Finley, Monique Anderson, Thomas J. Melia, Hyun Jeong, Bryan J. Bartlett, Katherine M. Myers, Hanne C.G. Birkeland, Trond Lamark, Dimitri Krainc, Andreas Brech, Harald Stenmark, Anne Simonsen, Ai Yamamoto

Mol Cell. Author manuscript; available in PMC 2011 Apr 23.

Published in final edited form as: Mol Cell. 2010 Apr 23; 38(2): 265–279. doi: 10.1016/j.molcel.2010.04.007

PMCID:: PMC2867245

Abstract Article PDF–3.7M

Select item 255627020.

Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin

Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108

PMCID:: PMC2556270

Abstract Article PDF–493K

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