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Items: 1 to 20 of 72

1.
The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis
Victor E. Cruz, Christine S. Weirich, Nagesh Peddada, Jan P. Erzberger
Nat Commun. 2024; 15: 3296. Published online 2024 Apr 17. doi: 10.1038/s41467-024-47616-7
PMCID:
PMC11024185
AbstractArticlePDF–7.4M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
4.
Genetic requirements for repair of lesions caused by single genomic ribonucleotides in S phase
Natalie Schindler, Matthias Tonn, Vanessa Kellner, Jia Jun Fung, Arianna Lockhart, Olga Vydzhak, Thomas Juretschke, Stefanie Möckel, Petra Beli, Anton Khmelinskii, Brian Luke
Nat Commun. 2023; 14: 1227. Published online 2023 Mar 3. doi: 10.1038/s41467-023-36866-6
PMCID:
PMC9984532
AbstractArticlePDF–3.0M
5.
The RNA export and RNA decay complexes THO and TRAMP prevent transcription-replication conflicts, DNA breaks, and CAG repeat contractions
Rebecca E. Brown, Xiaofeng A. Su, Stacey Fair, Katherine Wu, Lauren Verra, Robyn Jong, Kristin Andrykovich, Catherine H. Freudenreich
PLoS Biol. 2022 Dec; 20(12): e3001940. Published online 2022 Dec 27. doi: 10.1371/journal.pbio.3001940
PMCID:
PMC9829180
AbstractArticlePDF–2.5M
6.
A role for the Saccharomyces cerevisiae Rtt109 histone acetyltransferase in R-loop homeostasis and associated genome instability
Juan Carlos Cañas, María Luisa García-Rubio, Alicia García, Francisco Antequera, Belén Gómez-González, Andrés Aguilera
Genetics. 2022 Sep; 222(1): iyac108. Published online 2022 Jul 22. doi: 10.1093/genetics/iyac108
PMCID:
PMC9434296
AbstractArticlePDF–1.7M
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
A role for Rad5 in ribonucleoside monophosphate (rNMP) tolerance
Menattallah Elserafy, Iman El-Shiekh, Dalia Fleifel, Reham Atteya, Abdelrahman AlOkda, Mohamed M Abdrabbou, Mostafa Nasr, Sherif F El-Khamisy
Life Sci Alliance. 2021 Oct; 4(10): e202000966. Published online 2021 Aug 18. doi: 10.26508/lsa.202000966
PMCID:
PMC8380674
AbstractArticlePDF–3.6M
9.
DNA-RNA hybrids at DSBs interfere with repair by homologous recombination
Pedro Ortega, José Antonio Mérida-Cerro, Ana G Rondón, Belén Gómez-González, Andrés Aguilera
eLife. 2021; 10: e69881. Published online 2021 Jul 8. doi: 10.7554/eLife.69881
PMCID:
PMC8289408
AbstractArticlePDF–4.6M
10.
R-loops at centromeric chromatin contribute to defects in kinetochore integrity and chromosomal instability in budding yeast
Prashant K. Mishra, Arijita Chakraborty, Elaine Yeh, Wenyi Feng, Kerry S. Bloom, Munira A. Basrai
Mol Biol Cell. 2021 Jan 1; 32(1): 74–89. doi: 10.1091/mbc.E20-06-0379
PMCID:
PMC8098821
AbstractArticlePDF–6.9M
11.
Yeast Nucleolin Nsr1 Impedes Replication and Elevates Genome Instability at an Actively Transcribed Guanine-Rich G4 DNA-Forming Sequence
Shivani Singh, Alexandra Berroyer, Minseon Kim, Nayun Kim
Genetics. 2020 Dec; 216(4): 1023–1037. Published online 2020 Oct 26. doi: 10.1534/genetics.120.303736
PMCID:
PMC7768239
AbstractArticlePDF–1.4M
12.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
13.
RNA-cDNA hybrids mediate transposition via different mechanisms
Lauren A. Todd, Amanda C. Hall, Violena Pietrobon, Janet N. Y. Chan, Guillaume Laflamme, Karim Mekhail
Sci Rep. 2020; 10: 16034. Published online 2020 Sep 29. doi: 10.1038/s41598-020-73018-y
PMCID:
PMC7524711
AbstractArticlePDF–4.2M
14.
Genetic characterization of three distinct mechanisms supporting RNA-driven DNA repair and modification reveals major role of DNA polymerase ζ
Chance Meers, Havva Keskin, Gabor Banyai, Olga Mazina, Taehwan Yang, Alli L. Gombolay, Kuntal Mukherjee, Efiyenia I. Kaparos, Gary Newnam, Alexander Mazin, Francesca Storici
Mol Cell. Author manuscript; available in PMC 2021 Sep 17.
Published in final edited form as: Mol Cell. 2020 Sep 17; 79(6): 1037–1050.e5. Published online 2020 Sep 2. doi: 10.1016/j.molcel.2020.08.011
PMCID:
PMC7502545
AbstractArticlePDF–1.9M
15.
Harmful DNA:RNA hybrids are formed in cis and in a Rad51-independent manner
Juan Lafuente-Barquero, Maria Luisa García-Rubio, Marta San Martin-Alonso, Belén Gómez-González, Andrés Aguilera
eLife. 2020; 9: e56674. Published online 2020 Aug 4. doi: 10.7554/eLife.56674
PMCID:
PMC7431130
AbstractArticlePDF–967K
16.
High density of unrepaired genomic ribonucleotides leads to Topoisomerase 1-mediated severe growth defects in absence of ribonucleotide reductase
Susana M Cerritelli, Jaime Iranzo, Sushma Sharma, Andrei Chabes, Robert J Crouch, David Tollervey, Aziz El Hage
Nucleic Acids Res. 2020 May 7; 48(8): 4274–4297. Published online 2020 Mar 18. doi: 10.1093/nar/gkaa103
PMCID:
PMC7192613
AbstractArticlePDF–7.7M
17.
Heme, A Metabolic Sensor, Directly Regulates the Activity of the KDM4 Histone Demethylase Family and Their Interactions with Partner Proteins
Purna Chaitanya Konduri, Tianyuan Wang, Narges Salamat, Li Zhang
Cells. 2020 Mar; 9(3): 773. Published online 2020 Mar 22. doi: 10.3390/cells9030773
PMCID:
PMC7140707
AbstractArticlePDF–3.2M
18.
Sen1 Is Recruited to Replication Forks via Ctf4 and Mrc1 and Promotes Genome Stability
Rowin Appanah, Emma Claire Lones, Umberto Aiello, Domenico Libri, Giacomo De Piccoli
Cell Rep. 2020 Feb 18; 30(7): 2094–2105.e9. Published online 2020 Feb 18. doi: 10.1016/j.celrep.2020.01.087
PMCID:
PMC7034062
AbstractArticle
19.
Sumoylation of the DNA polymerase ε by the Smc5/6 complex contributes to DNA replication
Xiangzhou Meng, Lei Wei, Xiao P. Peng, Xiaolan Zhao
PLoS Genet. 2019 Nov; 15(11): e1008426. Published online 2019 Nov 25. doi: 10.1371/journal.pgen.1008426
PMCID:
PMC6876774
AbstractArticlePDF–2.3M
20.
Saccharomyces cerevisiae Centromere RNA Is Negatively Regulated by Cbf1 and Its Unscheduled Synthesis Impacts CenH3 Binding
Chi-Fu Chen, Thomas J. Pohl, Angela Chan, Joshua S. Slocum, Virginia A. Zakian
Genetics. 2019 Oct; 213(2): 465–479. Published online 2019 Aug 7. doi: 10.1534/genetics.119.302528
PMCID:
PMC6781895
AbstractArticlePDF–2.3M

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