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Select item 81650301.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 71699832.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 69062653.

Survival of aging CD264⁺ and CD264⁻ populations of human bone marrow mesenchymal stem cells is independent of colony-forming efficiency

Sean D. Madsen, Sean H. Jones, H. Alan Tucker, Margaret K. Giler, Dyllan C. Muller, Carson T. Discher, Katie C. Russell, Georgina L. Dobek, Mimi C. Sammarco, Bruce A. Bunnell, Kim C. O’Connor

Biotechnol Bioeng. Author manuscript; available in PMC 2021 Jan 1.

Published in final edited form as: Biotechnol Bioeng. 2020 Jan; 117(1): 223–237. Published online 2019 Nov 12. doi: 10.1002/bit.27195

PMCID:: PMC6906265

Abstract Article PDF–2.1M

Select item 68910974.

Regulation of ETAA1-mediated ATR activation couples DNA replication fidelity and genome stability

Divya Achuthankutty, Roshan Singh Thakur, Peter Haahr, Saskia Hoffmann, Alexandros P. Drainas, Anna H. Bizard, Joachim Weischenfeldt, Ian D. Hickson, Niels Mailand

J Cell Biol. 2019 Dec 2; 218(12): 3943–3953. Published online 2019 Oct 15. doi: 10.1083/jcb.201905064

PMCID:: PMC6891097

Abstract Article PDF–2.7M

Select item 67575735.

Lack of Tumor Necrosis Factor-Related Apoptosis-Inducing Ligand But Presence of Its Receptors in the Human Brain

Jan Dörr, Ingo Bechmann, Sonia Waiczies, Orhan Aktas, Henning Walczak, Peter H. Krammer, Robert Nitsch, Frauke Zipp

J Neurosci. 2002 Feb 15; 22(4): RC209. doi: 10.1523/JNEUROSCI.22-04-j0001.2002

PMCID:: PMC6757573

Abstract PDF–690K

Select item 56224466.

Decoy TRAIL receptor CD264: a cell surface marker of cellular aging for human bone marrow-derived mesenchymal stem cells

Sean D. Madsen, Katie C. Russell, H. Alan Tucker, Julie Glowacki, Bruce A. Bunnell, Kim C. O’Connor

Stem Cell Res Ther. 2017; 8: 201. Published online 2017 Sep 29. doi: 10.1186/s13287-017-0649-4

PMCID:: PMC5622446

Abstract Article PDF–2.6M

Select item 46479417.

hORFeome v3.1: A resource of human open reading frames representing over 10,000 human genes

Philippe Lamesch, Ning Li, Stuart Milstein, Changyu Fan, Tong Hao, Gabor Szabo, Zhenjun Hu, Kavitha Venkatesan, Graeme Bethel, Paul Martin, Jane Rogers, Stephanie Lawlor, Stuart McLaren, Amélie Dricot, Heather Borick, Michael E. Cusick, Jean Vandenhaute, Ian Dunham, David E. Hill, Marc Vidal

Genomics. 2007 Mar; 89(3): 307–315. doi: 10.1016/j.ygeno.2006.11.012

PMCID:: PMC4647941

Abstract Article

Select item 44348788.

Identification of potential HIV restriction factors by combining evolutionary genomic signatures with functional analyses

Paul J McLaren, Ali Gawanbacht, Nitisha Pyndiah, Christian Krapp, Dominik Hotter, Silvia F Kluge, Nicola Götz, Jessica Heilmann, Katharina Mack, Daniel Sauter, Danielle Thompson, Jérémie Perreaud, Antonio Rausell, Miguel Munoz, Angela Ciuffi, Frank Kirchhoff, Amalio Telenti

Retrovirology. 2015; 12: 41. Published online 2015 May 16. doi: 10.1186/s12977-015-0165-5

PMCID:: PMC4434878

Abstract Article PDF–2.0M

Select item 41398259.

Association of TNFRSF10D DNA-Methylation with the Survival of Melanoma Patients

Gudrun Ratzinger, Simone Mitteregger, Barbara Wolf, Regina Berger, Bernhard Zelger, Georg Weinlich, Peter Fritsch, Georg Goebel, Heidelinde Fiegl

Int J Mol Sci. 2014 Jul; 15(7): 11984–11995. Published online 2014 Jul 7. doi: 10.3390/ijms150711984

PMCID:: PMC4139825

Abstract Article PDF–737K

Select item 377823410.

Membrane expression of TRAIL receptors DR4, DR5, DcR1 and DcR2 in the normal endometrium, atypical endometrial hyperplasia and endometrioid adenocarcinoma: a tissue microarray study

Leszek Gottwald, Janusz Piekarski, Robert Kubiak, Jarosław Szwalski, Grażyna Pasz-Walczak, Piotr Sęk, Michał Spych, Jacek Suzin, Wiesław Tyliński, Arkadiusz Jeziorski

Arch Gynecol Obstet. 2013; 288(4): 889–899. Published online 2013 Apr 13. doi: 10.1007/s00404-013-2840-x

PMCID:: PMC3778234

Abstract Article PDF–946K

Select item 358276911.

CBFβ stabilizes HIV Vif to counteract APOBEC3 at the expense of RUNX1 target gene expression

Dong Young Kim, Eunju Kwon, Paul D. Hartley, David C. Crosby, Sumanjit Mann, Nevan J. Krogan, John D. Gross

Mol Cell. Author manuscript; available in PMC 2014 Feb 21.

Published in final edited form as: Mol Cell. 2013 Feb 21; 49(4): 632–644. Published online 2013 Jan 17. doi: 10.1016/j.molcel.2012.12.012

PMCID:: PMC3582769

Abstract Article PDF–4.5M

Select item 319759112.

Cross-Platform Array Screening Identifies COL1A2, THBS1, TNFRSF10D and UCHL1 as Genes Frequently Silenced by Methylation in Melanoma

Vanessa F. Bonazzi, Derek J. Nancarrow, Mitchell S. Stark, Ralf J. Moser, Glen M. Boyle, Lauren G. Aoude, Christopher Schmidt, Nicholas K. Hayward

PLoS One. 2011; 6(10): e26121. Published online 2011 Oct 20. doi: 10.1371/journal.pone.0026121

PMCID:: PMC3197591

Abstract Article PDF–357K

Select item 317805913.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 310558714.

Xiaofan Zhang, Hushan Yang, J.Jack Lee, Edward Kim, Scott M. Lippman, Fadlo R. Khuri, Margaret R. Spitz, Reuben Lotan, Waun K. Hong, Xifeng Wu

Carcinogenesis. 2010 Dec; 31(12): 2118–2123. Published online 2010 Sep 5. doi: 10.1093/carcin/bgq177

PMCID:: PMC3105587

Abstract Article PDF–236K

Select item 307169815.

HIV Infection Enhances TRAIL-Induced Cell Death in Macrophage by Down-Regulating Decoy Receptor Expression and Generation of Reactive Oxygen Species

Dan-Ming Zhu, Juan Shi, Shilian Liu, Yanxin Liu, Dexian Zheng

PLoS One. 2011; 6(4): e18291. Published online 2011 Apr 5. doi: 10.1371/journal.pone.0018291

PMCID:: PMC3071698

Abstract Article PDF–2.3M

Select item 295562016.

Short-hairpin RNA-induced suppression of adenine nucleotide translocase-2 in breast cancer cells restores their susceptibility to TRAIL-induced apoptosis by activating JNK and modulating TRAIL receptor expression

Ji-Young Jang, Yoon-Kyung Jeon, Yun Choi, Chul-Woo Kim

Mol Cancer. 2010; 9: 262. Published online 2010 Sep 28. doi: 10.1186/1476-4598-9-262

PMCID:: PMC2955620

Abstract Article PDF–1.0M

Select item 294516817.

Variation at the NFATC2 Locus Increases the Risk of Thiazolidinedione-Induced Edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) Study

Swneke D. Bailey, Changchun Xie, Ron Do, Alexandre Montpetit, Rafael Diaz, Viswanathan Mohan, Bernard Keavney, Salim Yusuf, Hertzel C. Gerstein, James C. Engert, Sonia Anand, on behalf of the DREAM investigators

Diabetes Care. 2010 Oct; 33(10): 2250–2253. Published online 2010 Jul 13. doi: 10.2337/dc10-0452

PMCID:: PMC2945168

Abstract Article PDF–153K

Select item 293635018.

TRAIL Death Receptor-4, Decoy Receptor-1 and Decoy Receptor-2 Expression on CD8⁺T Cells Correlate with the Disease Severity in Patients with Rheumatoid Arthritis

Atil Bisgin, Ender Terzioglu, Cigdem Aydin, Burcak Yoldas, Veli Yazisiz, Nilufer Balci, Huseyin Bagci, Reginald M Gorczynski, Cezmi A Akdis, Salih Sanlioglu

BMC Musculoskelet Disord. 2010; 11: 192. Published online 2010 Aug 27. doi: 10.1186/1471-2474-11-192

PMCID:: PMC2936350

Abstract Article PDF–1.6M

Select item 292825219.

Meta-analysis of genome-wide association studies of attention deficit/hyperactivity disorder

Benjamin M Neale, Sarah E. Medland, Stephan Ripke, Philip Asherson, Barbara Franke, Klaus-Peter Lesch, Stephen V. Faraone, Thuy Trang Nguyen, Helmut Schäfer, Peter Holmans, Mark Daly, Hans-Christoph Steinhausen, Christine Freitag, Andreas Reif, Tobias J. Renner, Marcel Romanos, Jasmin Romanos, Susanne Walitza, Andreas Warnke, Jobst Meyer, Haukur Palmason, Jan Buitelaar, Alejandro Arias Vasquez, Nanda Lambregts-Rommelse, Michael Gill, Richard J.L. Anney, Kate Langely, Michael O’Donovan, Nigel Williams, Michael Owen, Anita Thapar, Lindsey Kent, Joseph Sergeant, Herbert Roeyers, Eric Mick, Joseph Biederman, Alysa Doyle, Susan Smalley, Sandra Loo, Hakon Hakonarson, Josephine Elia, Alexandre Todorov, Ana Miranda, Fernando Mulas, Richard P. Ebstein, Aribert Rothenberger, Tobias Banaschewski, Robert D. Oades, Edmund Sonuga-Barke, James McGough, Laura Nisenbaum, Frank Middleton, Xiaolan Hu, Stan Nelson

J Am Acad Child Adolesc Psychiatry. Author manuscript; available in PMC 2011 Sep 1.

Published in final edited form as: J Am Acad Child Adolesc Psychiatry. 2010 Sep; 49(9): 884–897. Published online 2010 Aug 1. doi: 10.1016/j.jaac.2010.06.008

PMCID:: PMC2928252

Abstract Article PDF–927K

Select item 292822420.

Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity

HD Hosgood, III, L Zhang, M Shen, SI Berndt, R Vermeulen, G Li, S Yin, M Yeager, J Yuenger, N Rothman, S Chanock, M Smith, Q Lan

Occup Environ Med. Author manuscript; available in PMC 2010 Dec 1.

Published in final edited form as: Occup Environ Med. 2009 Dec; 66(12): 848–853. Published online 2009 Sep 22. doi: 10.1136/oem.2008.044024

PMCID:: PMC2928224

Abstract Article PDF–321K

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