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Items: 20

1.
A standardized nomenclature for mammalian histone genes
Ruth L. Seal, Paul Denny, Elspeth A. Bruford, Anna K. Gribkova, David Landsman, William F. Marzluff, Monica McAndrews, Anna R. Panchenko, Alexey K. Shaytan, Paul B. Talbert
Epigenetics Chromatin. 2022; 15: 34. Published online 2022 Oct 1. doi: 10.1186/s13072-022-00467-2
PMCID:
PMC9526256
AbstractArticlePDF–1.1M
2.
Multivalent DNA and nucleosome acidic patch interactions specify VRK1 mitotic localization and activity
Gabrielle R Budziszewski, Yani Zhao, Cathy J Spangler, Katarzyna M Kedziora, Michael R Williams, Dalal N Azzam, Aleksandra Skrajna, Yuka Koyama, Andrew P Cesmat, Holly C Simmons, Eyla C Arteaga, Joshua D Strauss, Dmitri Kireev, Robert K McGinty
Nucleic Acids Res. 2022 May 6; 50(8): 4355–4371. Published online 2022 Apr 7. doi: 10.1093/nar/gkac198
PMCID:
PMC9071384
AbstractArticlePDF–8.7M
3.
SARS-CoV-2 Disrupts Splicing, Translation, and Protein Trafficking to Suppress Host Defenses
Abhik K. Banerjee, Mario R. Blanco, Emily A. Bruce, Drew D. Honson, Linlin M. Chen, Amy Chow, Prashant Bhat, Noah Ollikainen, Sofia A. Quinodoz, Colin Loney, Jasmine Thai, Zachary D. Miller, Aaron E. Lin, Madaline M. Schmidt, Douglas G. Stewart, Daniel Goldfarb, Giuditta De Lorenzo, Suzannah J. Rihn, Rebecca M. Voorhees, Jason W. Botten, Devdoot Majumdar, Mitchell Guttman
Cell. 2020 Nov 25; 183(5): 1325–1339.e21. doi: 10.1016/j.cell.2020.10.004
PMCID:
PMC7543886
AbstractArticle
4.
VIRMA mediates preferential m6A mRNA methylation in 3′UTR and near stop codon and associates with alternative polyadenylation
Yanan Yue, Jun Liu, Xiaolong Cui, Jie Cao, Guanzheng Luo, Zezhou Zhang, Tao Cheng, Minsong Gao, Xiao Shu, Honghui Ma, Fengqin Wang, Xinxia Wang, Bin Shen, Yizhen Wang, Xinhua Feng, Chuan He, Jianzhao Liu
Cell Discov. 2018; 4: 10. Published online 2018 Feb 27. doi: 10.1038/s41421-018-0019-0
PMCID:
PMC5826926
AbstractArticlePDF–2.3M
5.
De novo dominant ASXL3 mutations alter H2A deubiquitination and transcription in Bainbridge–Ropers syndrome
Anshika Srivastava, K.C. Ritesh, Yao-Chang Tsan, Rosy Liao, Fengyun Su, Xuhong Cao, Mark C. Hannibal, Catherine E. Keegan, Arul M. Chinnaiyan, Donna M. Martin, Stephanie L. Bielas
Hum Mol Genet. 2016 Feb 1; 25(3): 597–608. Published online 2015 Dec 8. doi: 10.1093/hmg/ddv499
PMCID:
PMC4731023
AbstractArticlePDF–649K
6.
The variant Polycomb Repressor Complex 1 component PCGF1 interacts with a pluripotency sub-network that includes DPPA4, a regulator of embryogenesis
Giorgio Oliviero, Nayla Munawar, Ariane Watson, Gundula Streubel, Gwendolyn Manning, Vivian Bardwell, Adrian P. Bracken, Gerard Cagney
Sci Rep. 2015; 5: 18388. Published online 2015 Dec 21. doi: 10.1038/srep18388
PMCID:
PMC4685312
AbstractArticlePDF–1.5M
7.
Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage
Romain Drissi, Marie-Line Dubois, Mélanie Douziech, François-Michel Boisvert
Mol Cell Proteomics. 2015 Jul; 14(7): 2002–2013. Published online 2015 May 11. doi: 10.1074/mcp.M115.048991
PMCID:
PMC4587322
AbstractArticlePDF–3.0M
8.
A proteome-scale map of the human interactome network
Thomas Rolland, Murat Taşan, Benoit Charloteaux, Samuel J. Pevzner, Quan Zhong, Nidhi Sahni, Song Yi, Irma Lemmens, Celia Fontanillo, Roberto Mosca, Atanas Kamburov, Susan D. Ghiassian, Xinping Yang, Lila Ghamsari, Dawit Balcha, Bridget E. Begg, Pascal Braun, Marc Brehme, Martin P. Broly, Anne-Ruxandra Carvunis, Dan Convery-Zupan, Roser Corominas, Jasmin Coulombe-Huntington, Elizabeth Dann, Matija Dreze, Amélie Dricot, Changyu Fan, Eric Franzosa, Fana Gebreab, Bryan J. Gutierrez, Madeleine F. Hardy, Mike Jin, Shuli Kang, Ruth Kiros, Guan Ning Lin, Katja Luck, Andrew MacWilliams, Jörg Menche, Ryan R. Murray, Alexandre Palagi, Matthew M. Poulin, Xavier Rambout, John Rasla, Patrick Reichert, Viviana Romero, Elien Ruyssinck, Julie M. Sahalie, Annemarie Scholz, Akash A. Shah, Amitabh Sharma, Yun Shen, Kerstin Spirohn, Stanley Tam, Alexander O. Tejeda, Shelly A. Wanamaker, Jean-Claude Twizere, Kerwin Vega, Jennifer Walsh, Michael E. Cusick, Yu Xia, Albert-László Barabási, Lilia M. Iakoucheva, Patrick Aloy, Javier De Las Rivas, Jan Tavernier, Michael A. Calderwood, David E. Hill, Tong Hao, Frederick P. Roth, Marc Vidal
Cell. Author manuscript; available in PMC 2015 Nov 20.
Published in final edited form as: Cell. 2014 Nov 20; 159(5): 1212–1226. doi: 10.1016/j.cell.2014.10.050
PMCID:
PMC4266588
AbstractArticlePDF–3.1M
9.
Structural insights into recognition of acetylated histone ligands by the BRPF1 bromodomain
Mulu Y. Lubula, Brian E. Eckenroth, Samuel Carlson, Amanda Poplawski, Maksymilian Chruszcz, Karen C. Glass
FEBS Lett. Author manuscript; available in PMC 2015 Nov 3.
Published in final edited form as: FEBS Lett. 2014 Nov 3; 588(21): 3844–3854. Published online 2014 Sep 30. doi: 10.1016/j.febslet.2014.09.028
PMCID:
PMC4252766
AbstractArticlePDF–1.3M
10.
In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine
Simona Principe, E. Ellen Jones, Yunee Kim, Ankit Sinha, Julius O. Nyalwidhe, Jasmin Brooks, O. John Semmes, Dean A. Troyer, Raymond S. Lance, Thomas Kislinger, Richard R. Drake
Proteomics. Author manuscript; available in PMC 2014 May 1.
Published in final edited form as: Proteomics. 2013 May; 13(0): 1667–1671. Published online 2013 Apr 23. doi: 10.1002/pmic.201200561
PMCID:
PMC3773505
AbstractArticlePDF–630K
11.
Macro Histone H2A1.2 (MacroH2A1) Protein Suppresses Mitotic Kinase VRK1 during Interphase
Wanil Kim, Goutam Chakraborty, Sangjune Kim, Joon Shin, Choon-Ho Park, Min-Woo Jeong, Nagakumar Bharatham, Ho Sup Yoon, Kyong-Tai Kim
J Biol Chem. 2012 Feb 17; 287(8): 5278–5289. Published online 2011 Dec 22. doi: 10.1074/jbc.M111.281709
PMCID:
PMC3285308
AbstractArticlePDF–2.9M
12.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
13.
Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics
Eric J. Bennett, John Rush, Steven P. Gygi, J. Wade Harper
Cell. Author manuscript; available in PMC 2011 Dec 10.
Published in final edited form as: Cell. 2010 Dec 10; 143(6): 951–965. doi: 10.1016/j.cell.2010.11.017
PMCID:
PMC3008586
AbstractArticlePDF–3.0M
14.
Molecular mimicry between IL-33 and KSHV for attachment to chromatin through the H2A–H2B acidic pocket
Lucie Roussel, Monique Erard, Corinne Cayrol, Jean-Philippe Girard
EMBO Rep. 2008 Oct; 9(10): 1006–1012. Published online 2008 Aug 8. doi: 10.1038/embor.2008.145
PMCID:
PMC2572127
AbstractArticlePDF–1.2M
15.
DNA damage triggers nucleotide excision repair-dependent monoubiquitylation of histone H2A
Steven Bergink, Florian A. Salomons, Deborah Hoogstraten, Tom A.M. Groothuis, Harm de Waard, Junxin Wu, Li Yuan, Elisabetta Citterio, Adriaan B. Houtsmuller, Jacques Neefjes, Jan H.J. Hoeijmakers, Wim Vermeulen, Nico P. Dantuma
Genes Dev. 2006 May 15; 20(10): 1343–1352. doi: 10.1101/gad.373706
PMCID:
PMC1472908
AbstractArticlePDF–648K
16.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
17.
Nucleosomal histone kinase-1 phosphorylates H2A Thr 119 during mitosis in the early Drosophila embryo
Hitoshi Aihara, Takeya Nakagawa, Kiyoshi Yasui, Tsutomu Ohta, Susumu Hirose, Naoshi Dhomae, Koji Takio, Mayumi Kaneko, Yukio Takeshima, Masami Muramatsu, Takashi Ito
Genes Dev. 2004 Apr 15; 18(8): 877–888. doi: 10.1101/gad.1184604
PMCID:
PMC395847
AbstractArticlePDF–424K
18.
Regulation of HIV-1 gene expression by histone acetylation and factor recruitment at the LTR promoter
Marina Lusic, Alessandro Marcello, Anna Cereseto, Mauro Giacca
EMBO J. 2003 Dec 15; 22(24): 6550–6561. doi: 10.1093/emboj/cdg631
PMCID:
PMC291826
AbstractArticlePDF–664K
19.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K
20.
Transcriptional Activation of the Integrated Chromatin-Associated Human Immunodeficiency Virus Type 1 Promoter
Aboubaker El Kharroubi, Graziella Piras, Ralf Zensen, Malcolm A. Martin
Mol Cell Biol. 1998 May; 18(5): 2535–2544. doi: 10.1128/mcb.18.5.2535
PMCID:
PMC110633
AbstractArticlePDF–1.6M

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