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Items: 1 to 20 of 60

1.
Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes.
H Shimada, M Sugiura
Nucleic Acids Res. 1991 Mar 11; 19(5): 983–995. doi: 10.1093/nar/19.5.983
PMCID:
PMC333770
SummaryPage BrowsePDF–1.3M
2.
The complete chloroplast genome of greater duckweed (Spirodela polyrhiza 7498) using PacBio long reads: insights into the chloroplast evolution and transcription regulation
Yating Zhang, Dong An, Changsheng Li, Zhixuan Zhao, Wenqin Wang
BMC Genomics. 2020; 21: 76. Published online 2020 Jan 28. doi: 10.1186/s12864-020-6499-y
PMCID:
PMC6986005
AbstractArticlePDF–1.9M
3.
Signatures of differential selection in chloroplast genome between japonica and indica
Lin Cheng, Jungrye Nam, Sang-Ho Chu, Phitaktansakul Rungnapa, Myeong-hyeon Min, Yuan Cao, Ji-min Yoo, Jee-Su Kang, Kyu-Won Kim, Yong-Jin Park
Rice (N Y) 2019; 12: 65. Published online 2019 Aug 14. doi: 10.1186/s12284-019-0322-x
PMCID:
PMC6692809
AbstractArticlePDF–2.2M
4.
Analyzing and Characterizing the Chloroplast Genome of Salix wilsonii
Yingnan Chen, Nan Hu, Huaitong Wu
Biomed Res Int. 2019; 2019: 5190425. Published online 2019 Jul 15. doi: 10.1155/2019/5190425
PMCID:
PMC6662467
AbstractArticlePDF–1.4M
5.
Evolution of Oryza chloroplast genomes promoted adaptation to diverse ecological habitats
Li-Zhi Gao, Yun-Long Liu, Dan Zhang, Wei Li, Ju Gao, Yuan Liu, Kui Li, Chao Shi, Yuan Zhao, You-Jie Zhao, Jun-Ying Jiao, Shu-Yan Mao, Cheng-Wen Gao, Evan E. Eichler
Commun Biol. 2019; 2: 278. Published online 2019 Jul 26. doi: 10.1038/s42003-019-0531-2
PMCID:
PMC6659635
AbstractArticlePDF–1.6M
6.
Tracing the Evolution of the Plastome and Mitogenome in the Chloropicophyceae Uncovered Convergent tRNA Gene Losses and a Variant Plastid Genetic Code
Monique Turmel, Adriana Lopes dos Santos, Christian Otis, Roxanne Sergerie, Claude Lemieux
Genome Biol Evol. 2019 Apr; 11(4): 1275–1292. Published online 2019 Apr 1. doi: 10.1093/gbe/evz074
PMCID:
PMC6486808
AbstractArticlePDF–2.9M
7.
PPR Protein BFA2 Is Essential for the Accumulation of the atpH/F Transcript in Chloroplasts
Lin Zhang, Wen Zhou, Liping Che, Jean-David Rochaix, Congming Lu, Wenjing Li, Lianwei Peng
Front Plant Sci. 2019; 10: 446. Published online 2019 Apr 12. doi: 10.3389/fpls.2019.00446
PMCID:
PMC6474325
AbstractArticlePDF–6.4M
8.
GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes
Brian B. Merritt, Lily S. Cheung
BMC Bioinformatics. 2019; 20: 122. Published online 2019 Mar 12. doi: 10.1186/s12859-019-2712-x
PMCID:
PMC6416924
AbstractArticlePDF–1.4M
9.
Genomic and evolutionary aspects of chloroplast tRNA in monocot plants
Tapan Kumar Mohanta, Abdul Latif Khan, Abeer Hashem, Elsayed Fathi Abd_ Allah, Dhananjay Yadav, Ahmed Al-Harrasi
BMC Plant Biol. 2019; 19: 39. Published online 2019 Jan 22. doi: 10.1186/s12870-018-1625-6
PMCID:
PMC6341768
AbstractArticlePDF–2.5M
10.
Comparative assessment shows the reliability of chloroplast genome assembly using RNA-seq
Carolina Osuna-Mascaró, Rafael Rubio de Casas, Francisco Perfectti
Sci Rep. 2018; 8: 17404. Published online 2018 Nov 27. doi: 10.1038/s41598-018-35654-3
PMCID:
PMC6258696
AbstractArticlePDF–3.1M
11.
Complete chloroplast genome sequence of Dryopteris fragrans (L.) Schott and the repeat structures against the thermal environment
Rui Gao, Wenzhong Wang, Qingyang Huang, Ruifeng Fan, Xu Wang, Peng Feng, Guangming Zhao, Shuang Bian, Hongli Ren, Ying Chang
Sci Rep. 2018; 8: 16635. Published online 2018 Nov 9. doi: 10.1038/s41598-018-35061-8
PMCID:
PMC6226466
AbstractArticlePDF–3.2M
12.
Mosaic mitochondrial-plastid insertions into the nuclear genome show evidence of both non-homologous end joining and homologous recombination
Shir Portugez, William F. Martin, Einat Hazkani-Covo
BMC Evol Biol. 2018; 18: 162. Published online 2018 Nov 3. doi: 10.1186/s12862-018-1279-x
PMCID:
PMC6215612
AbstractArticlePDF–900K
13.
Investigation of mitochondrial-derived plastome sequences in the Paspalum lineage (Panicoideae; Poaceae)
Sean V. Burke, Mark C. Ungerer, Melvin R. Duvall
BMC Plant Biol. 2018; 18: 152. Published online 2018 Aug 3. doi: 10.1186/s12870-018-1379-1
PMCID:
PMC6091044
AbstractArticlePDF–1.2M
14.
Diversity and evolution of rice progenitors in Australia
Ali M. Moner, Agnelo Furtado, Ian Chivers, Glen Fox, Darren Crayn, Robert J. Henry
Ecol Evol. 2018 Apr; 8(8): 4360–4366. Published online 2018 Apr 2. doi: 10.1002/ece3.3989
PMCID:
PMC5916314
AbstractArticlePDF–637K
15.
Bacterial Microbiota of Rice Roots: 16S-Based Taxonomic Profiling of Endophytic and Rhizospheric Diversity, Endophytes Isolation and Simplified Endophytic Community
Felix Moronta-Barrios, Fabrizia Gionechetti, Alberto Pallavicini, Edgloris Marys, Vittorio Venturi
Microorganisms. 2018 Mar; 6(1): 14. Published online 2018 Feb 11. doi: 10.3390/microorganisms6010014
PMCID:
PMC5874628
AbstractArticlePDF–2.3M
16.
Unveiling Chloroplast RNA Editing Events Using Next Generation Small RNA Sequencing Data
Nureyev F. Rodrigues, Ana P. Christoff, Guilherme C. da Fonseca, Franceli R. Kulcheski, Rogerio Margis
Front Plant Sci. 2017; 8: 1686. Published online 2017 Sep 29. doi: 10.3389/fpls.2017.01686
PMCID:
PMC5626879
AbstractArticlePDF–1.2M
17.
Whole-Genome Characteristics and Polymorphic Analysis of Vietnamese Rice Landraces as a Comprehensive Information Resource for Marker-Assisted Selection
Hien Trinh, Khoa Truong Nguyen, Lam Van Nguyen, Huy Quang Pham, Can Thu Huong, Tran Dang Xuan, La Hoang Anh, Mario Caccamo, Sarah Ayling, Nguyen Thuy Diep, Cuong Nguyen, Khuat Huu Trung, Tran Dang Khanh
Int J Genomics. 2017; 2017: 9272363. Published online 2017 Feb 7. doi: 10.1155/2017/9272363
PMCID:
PMC5318636
AbstractArticlePDF–1.2M
18.
Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice
HyunJung Kim, Janelle Jung, Namrata Singh, Anthony Greenberg, Jeff J. Doyle, Wricha Tyagi, Jong-Wook Chung, Jennifer Kimball, Ruaraidh Sackville Hamilton, Susan R. McCouch
Rice (N Y) 2016; 9: 56. Published online 2016 Oct 12. doi: 10.1186/s12284-016-0119-0
Correction in:
Rice (N Y). 2017; 10: 17.
PMCID:
PMC5059230
AbstractArticlePDF–2.3M
19.
Comparative Analysis of the Chloroplast Genomic Information of Cunninghamia lanceolata (Lamb.) Hook with Sibling Species from the Genera Cryptomeria D. Don, Taiwania Hayata, and Calocedrus Kurz
Weiwei Zheng, Jinhui Chen, Zhaodong Hao, Jisen Shi
Int J Mol Sci. 2016 Jul; 17(7): 1084. Published online 2016 Jul 7. doi: 10.3390/ijms17071084
PMCID:
PMC4964460
AbstractArticlePDF–3.2M
20.
Comparative Chloroplast Genome Analyses of Streptophyte Green Algae Uncover Major Structural Alterations in the Klebsormidiophyceae, Coleochaetophyceae and Zygnematophyceae
Claude Lemieux, Christian Otis, Monique Turmel
Front Plant Sci. 2016; 7: 697. Published online 2016 May 24. doi: 10.3389/fpls.2016.00697
PMCID:
PMC4877394
AbstractArticlePDF–5.0M

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