PMC Links for Nucleotide (Select 1332355) - PMC

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Items: 17

Select item 63252431.

Low Postseroconversion CD4⁺ T-cell Level Is Associated with Faster Disease Progression and Higher Viral Evolutionary Rate in HIV-2 Infection

Angelica A. Palm, Philippe Lemey, Marianne Jansson, Fredrik Månsson, Anders Kvist, Zsófia Szojka, Antonio Biague, Zacarias José da Silva, Sarah L. Rowland-Jones, Hans Norrgren, Joakim Esbjörnsson, Patrik Medstrand

mBio. 2019 Jan-Feb; 10(1): e01245-18. Published online 2019 Jan 8. doi: 10.1128/mBio.01245-18

PMCID:: PMC6325243

Abstract Article PDF–932K

Select item 61466952.

Preadaptation of Simian Immunodeficiency Virus SIVsmm Facilitated Env-Mediated Counteraction of Human Tetherin by Human Immunodeficiency Virus Type 2

Elena Heusinger, Katja Deppe, Paola Sette, Christian Krapp, Dorota Kmiec, Silvia F. Kluge, Preston A. Marx, Cristian Apetrei, Frank Kirchhoff, Daniel Sauter

J Virol. 2018 Sep 15; 92(18): e00276-18. Prepublished online 2018 Jul 5. Published online 2018 Aug 29. doi: 10.1128/JVI.00276-18

PMCID:: PMC6146695

Abstract Article PDF–1.3M

Select item 58041163.

Putative HIV and SIV G-Quadruplex Sequences in Coding and Noncoding Regions Can Form G-Quadruplexes

Petra Krafčíková, Erika Demkovičová, Andrea Halaganová, Viktor Víglaský

J Nucleic Acids. 2017; 2017: 6513720. Published online 2017 Dec 31. doi: 10.1155/2017/6513720

PMCID:: PMC5804116

Abstract Article PDF–2.1M

Select item 57540894.

A Kolmogorov-Smirnov test for the molecular clock based on Bayesian ensembles of phylogenies

Fernando Antoneli, Fernando M. Passos, Luciano R. Lopes, Marcelo R. S. Briones

PLoS One. 2018; 13(1): e0190826. Published online 2018 Jan 4. doi: 10.1371/journal.pone.0190826

Correction in:: PLoS One. 2018; 13(2): e0193633.

PMCID:: PMC5754089

Abstract Article PDF–2.4M

Select item 57307725.

Resistance of Major Histocompatibility Complex Class B (MHC-B) to Nef-Mediated Downregulation Relative to that of MHC-A Is Conserved among Primate Lentiviruses and Influences Antiviral T Cell Responses in HIV-1-Infected Individuals

Francis Mwimanzi, Mako Toyoda, Macdonald Mahiti, Jaclyn K. Mann, Jeffrey N. Martin, David Bangsberg, Mark A. Brockman, Philip Goulder, Frank Kirchhoff, Zabrina L. Brumme, Thumbi Ndung'u, Takamasa Ueno

J Virol. 2018 Jan 1; 92(1): e01409-17. Prepublished online 2017 Oct 18. Published online 2017 Dec 14. doi: 10.1128/JVI.01409-17

PMCID:: PMC5730772

Abstract Article PDF–2.9M

Select item 53701076.

An information-based network approach for protein classification

Xiaogeng Wan, Xin Zhao, Stephen S. T. Yau

PLoS One. 2017; 12(3): e0174386. Published online 2017 Mar 28. doi: 10.1371/journal.pone.0174386

PMCID:: PMC5370107

Abstract Article PDF–2.9M

Select item 50080887.

Distinct Particle Morphologies Revealed through Comparative Parallel Analyses of Retrovirus-Like Particles

Jessica L. Martin, Sheng Cao, Jose O. Maldonado, Wei Zhang, Louis M. Mansky

J Virol. 2016 Sep 15; 90(18): 8074–8084. Prepublished online 2016 Jun 29. Published online 2016 Aug 26. doi: 10.1128/JVI.00666-16

PMCID:: PMC5008088

Abstract Article PDF–4.1M

Select item 38120368.

ZASC1 Stimulates HIV-1 Transcription Elongation by Recruiting P-TEFb and TAT to the LTR Promoter

James W. Bruce, Rachel Reddington, Elizabeth Mathieu, Megan Bracken, John A. T. Young, Paul Ahlquist

PLoS Pathog. 2013 Oct; 9(10): e1003712. Published online 2013 Oct 24. doi: 10.1371/journal.ppat.1003712

PMCID:: PMC3812036

Abstract Article PDF–3.9M

Select item 37202759.

A Twin-Cysteine Motif in the V2 Region of gp120 Is Associated with SIV Envelope Trimer Stabilization

Christopher Bohl, Dane Bowder, Jesse Thompson, Levon Abrahamyan, Sandra Gonzalez-Ramirez, Youdong Mao, Joseph Sodroski, Charles Wood, Shi-hua Xiang

PLoS One. 2013; 8(7): e69406. Published online 2013 Jul 23. doi: 10.1371/journal.pone.0069406

PMCID:: PMC3720275

Abstract Article PDF–1.4M

Select item 361698510.

Comparison of SIV and HIV-1 Genomic RNA Structures Reveals Impact of Sequence Evolution on Conserved and Non-Conserved Structural Motifs

Elizabeth Pollom, Kristen K. Dang, E. Lake Potter, Robert J. Gorelick, Christina L. Burch, Kevin M. Weeks, Ronald Swanstrom

PLoS Pathog. 2013 Apr; 9(4): e1003294. Published online 2013 Apr 4. doi: 10.1371/journal.ppat.1003294

PMCID:: PMC3616985

Abstract Article PDF–3.6M

Select item 288527211.

A Novel Construction of Genome Space with Biological Geometry

Chenglong Yu, Qian Liang, Changchuan Yin, Rong L. He, Stephen S.-T. Yau

DNA Res. 2010 Jun; 17(3): 155–168. Published online 2010 Apr 1. doi: 10.1093/dnares/dsq008

PMCID:: PMC2885272

Abstract Article PDF–268K

Select item 268155012.

Human Immunodeficiency Virus Type 1 Isolates with the Reverse Transcriptase (RT) Mutation Q145M Retain Nucleoside and Nonnucleoside RT Inhibitor Susceptibility

Vici Varghese, Yumi Mitsuya, Rajin Shahriar, Michael H. Bachmann, W. Jeffrey Fessel, Ron M. Kagan, Robert W. Shafer

Antimicrob Agents Chemother. 2009 May; 53(5): 2196–2198. Published online 2009 Feb 17. doi: 10.1128/AAC.01593-08

PMCID:: PMC2681550

Abstract Article PDF–42K

Select item 260325313.

A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution

Robert J. Gifford, Aris Katzourakis, Michael Tristem, Oliver G. Pybus, Mark Winters, Robert W. Shafer

Proc Natl Acad Sci U S A. 2008 Dec 23; 105(51): 20362–20367. Published online 2008 Dec 15. doi: 10.1073/pnas.0807873105

PMCID:: PMC2603253

Abstract Article PDF–565K

Select item 247869114.

Investigating selection on viruses: a statistical alignment approach

Saskia de Groot, Thomas Mailund, Gerton Lunter, Jotun Hein

BMC Bioinformatics. 2008; 9: 304. Published online 2008 Jul 10. doi: 10.1186/1471-2105-9-304

PMCID:: PMC2478691

Abstract Article PDF–516K

Select item 225899815.

Selective Downregulation of Rhesus Macaque and Sooty Mangabey Major Histocompatibility Complex Class I Molecules by Nef Alleles of Simian Immunodeficiency Virus and Human Immunodeficiency Virus Type 2

M. Quinn DeGottardi, Anke Specht, Benjamin Metcalf, Amitinder Kaur, Frank Kirchhoff, David T. Evans

J Virol. 2008 Mar; 82(6): 3139–3146. Published online 2008 Jan 16. doi: 10.1128/JVI.02102-07

PMCID:: PMC2258998

Abstract Article PDF–1.2M

Select item 216885816.

Nef-Mediated Enhancement of Virion Infectivity and Stimulation of Viral Replication Are Fundamental Properties of Primate Lentiviruses

Jan Münch, Devi Rajan, Michael Schindler, Anke Specht, Elke Rücker, Francis J. Novembre, Eric Nerrienet, Michaela C. Müller-Trutwin, Martine Peeters, Beatrice H. Hahn, Frank Kirchhoff

J Virol. 2007 Dec; 81(24): 13852–13864. Published online 2007 Oct 10. doi: 10.1128/JVI.00904-07