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Select item 55404451.

Metabolic Regulation of Gene Expression by Histone Lysine β-hydroxybutyrylation

Zhongyu Xie, Di Zhang, Dongjun Chung, Zhanyun Tang, He Huang, Lunzhi Dai, Shankang Qi, Jingya Li, Gozde Colak, Yue Chen, Chunmei Xia, Chao Peng, Haibin Ruan, Matt Kirkey, Danli Wang, Lindy M. Jensen, Oh Kwang Kwon, Sangkyu Lee, Scott D. Pletcher, Minjia Tan, David B. Lombard, Kevin P. White, Hongyu Zhao, Jia Li, Robert G. Roeder, Yang Xiaoyong, Yingming Zhao

Mol Cell. Author manuscript; available in PMC 2017 Aug 2.

Published in final edited form as: Mol Cell. 2016 Apr 21; 62(2): 194–206. doi: 10.1016/j.molcel.2016.03.036

PMCID:: PMC5540445

Abstract Article PDF–1.4M

Select item 48504242.

Dynamic Competing Histone H4 K5K8 Acetylation and Butyrylation Are Hallmarks of Highly Active Gene Promoters

Afsaneh Goudarzi, Di Zhang, He Huang, Sophie Barral, Oh Kwang Kwon, Shankang Qi, Zhanyun Tang, Thierry Buchou, Anne-Laure Vitte, Tieming He, Zhongyi Cheng, Emilie Montellier, Jonathan Gaucher, Sandrine Curtet, Alexandra Debernardi, Guillaume Charbonnier, Denis Puthier, Carlo Petosa, Daniel Panne, Sophie Rousseaux, Robert G. Roeder, Yingming Zhao, Saadi Khochbin

Mol Cell. 2016 Apr 21; 62(2): 169–180. doi: 10.1016/j.molcel.2016.03.014

PMCID:: PMC4850424

Abstract Article

Select item 41191753.

The RING Finger Protein MSL2 in the MOF Complex is an E3 Ubiquitin Ligase for H2B K34 and is Involved in Crosstalk with H3 K4 and K79 Methylation

Lipeng Wu, Barry M. Zee, Yanming Wang, Benjamin A. Garcia, Yali Dou

Mol Cell. Author manuscript; available in PMC 2014 Aug 1.

Published in final edited form as: Mol Cell. 2011 Jul 8; 43(1): 132–144. doi: 10.1016/j.molcel.2011.05.015

PMCID:: PMC4119175

Abstract Article PDF–1.1M

Select item 37315474.

USP49 deubiquitinates histone H2B and regulates cotranscriptional pre-mRNA splicing

Zhuo Zhang, Amanda Jones, Heui-Yun Joo, Dewang Zhou, Ying Cao, Shaoxia Chen, Hediye Erdjument-Bromage, Matthew Renfrow, Hang He, Paul Tempst, Tim M. Townes, Keith E. Giles, Ligeng Ma, Hengbin Wang

Genes Dev. 2013 Jul 15; 27(14): 1581–1595. doi: 10.1101/gad.211037.112

PMCID:: PMC3731547

Abstract Article PDF–3.3M

Select item 34188375.

Lysine Succinylation and Lysine Malonylation in Histones

Zhongyu Xie, Junbiao Dai, Lunzhi Dai, Minjia Tan, Zhongyi Cheng, Yeming Wu, Jef D. Boeke, Yingming Zhao

Mol Cell Proteomics. 2012 May; 11(5): 100–107. Published online 2012 Mar 4. doi: 10.1074/mcp.M111.015875

PMCID:: PMC3418837

Abstract Article PDF–2.1M

Select item 5289286.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 70335707.

An Information Entropy-Based Approach for Computationally Identifying Histone Lysine Butyrylation

Guohua Huang, Yang Zheng, Yao-Qun Wu, Guo-Sheng Han, Zu-Guo Yu

Front Genet. 2019; 10: 1325. Published online 2020 Feb 14. doi: 10.3389/fgene.2019.01325

PMCID:: PMC7033570

Abstract Article PDF–1.7M

Select item 67784328.

Structural analysis of urinary light chains and proteomic analysis of hyaline tubular casts in light chain associated kidney disorders

Thomas Reiter, Daniela Knafl, Hermine Agis, Karl Mechtler, Ludwig Wagner, Wolfgang Winnicki

PeerJ. 2019; 7: e7819. Published online 2019 Oct 2. doi: 10.7717/peerj.7819

PMCID:: PMC6778432

Abstract Article PDF–3.4M

Select item 66907359.

Cellular proteome datasets of human endothelial cells under physiologic state and after treatment with caffeine and epigallocatechin-3-gallate

Chanettee Chanthick, Visith Thongboonkerd

Data Brief. 2019 Aug; 25: 104292. Published online 2019 Jul 22. doi: 10.1016/j.dib.2019.104292

PMCID:: PMC6690735

Abstract Article PDF–297K

Select item 648429210.

Silencing of carbonic anhydrase I enhances the malignant potential of exosomes secreted by prostatic tumour cells

Radivojka Bánová Vulić, Martina Zdurienčíková, Silvia Tyčiaková, Oldřich Benada, Mária Dubrovčáková, Ján Lakota, Ľudovít Škultéty

J Cell Mol Med. 2019 May; 23(5): 3641–3655. Published online 2019 Mar 27. doi: 10.1111/jcmm.14265

PMCID:: PMC6484292

Abstract Article PDF–863K

Select item 646795711.

Brain Citrullination Patterns and T Cell Reactivity of Cerebrospinal Fluid-Derived CD4⁺ T Cells in Multiple Sclerosis

Wolfgang Faigle, Carolina Cruciani, Witold Wolski, Bernd Roschitzki, Marco Puthenparampil, Paula Tomas-Ojer, Carla Sellés-Moreno, Thomas Zeis, Ivan Jelcic, Nicole Schaeren-Wiemers, Mireia Sospedra, Roland Martin

Front Immunol. 2019; 10: 540. Published online 2019 Apr 10. doi: 10.3389/fimmu.2019.00540

PMCID:: PMC6467957

Abstract Article PDF–4.0M

Select item 644993112.

Identification of prothymosin alpha (PTMA) as a biomarker for esophageal squamous cell carcinoma (ESCC) by label-free quantitative proteomics and Quantitative Dot Blot (QDB)

Yanping Zhu, Xiaoying Qi, Cuicui Yu, Shoujun Yu, Chao Zhang, Yuan Zhang, Xiuxiu Liu, Yuxue Xu, Chunhua Yang, Wenguo Jiang, Geng Tian, Xuri Li, Jonas Bergquist, Jiandi Zhang, Lei Wang, Jia Mi

Clin Proteomics. 2019; 16: 12. Published online 2019 Apr 5. doi: 10.1186/s12014-019-9232-6

PMCID:: PMC6449931

Abstract Article PDF–5.2M

Select item 635607613.

PTMiner: Localization and Quality Control of Protein Modifications Detected in an Open Search and Its Application to Comprehensive Post-translational Modification Characterization in Human Proteome

Zhiwu An, Linhui Zhai, Wantao Ying, Xiaohong Qian, Fuzhou Gong, Minjia Tan, Yan Fu

Mol Cell Proteomics. 2019 Feb; 18(2): 391–405. Published online 2018 Nov 12. doi: 10.1074/mcp.RA118.000812

PMCID:: PMC6356076

Abstract Article PDF–3.3M

Select item 611474114.

Differentially expressed proteins in positive versus negative HNSCC lymph nodes

Alessandra Vidotto, Giovana M. Polachini, Marina de Paula-Silva, Sonia M. Oliani, Tiago Henrique, Rossana V. M. López, Patrícia M. Cury, Fabio D. Nunes, José F. Góis-Filho, Marcos B. de Carvalho, Andréia M. Leopoldino, Eloiza H. Tajara

BMC Med Genomics. 2018; 11: 73. Published online 2018 Aug 29. doi: 10.1186/s12920-018-0382-6

PMCID:: PMC6114741

Abstract Article PDF–1.5M

Select item 595354515.

The conformation of the histone H3 tail inhibits association of the BPTF PHD finger with the nucleosome

Emma A Morrison, Samuel Bowerman, Kelli L Sylvers, Jeff Wereszczynski, Catherine A Musselman

eLife. 2018; 7: e31481. Published online 2018 Apr 12. doi: 10.7554/eLife.31481

PMCID:: PMC5953545

Abstract Article PDF–4.6M

Select item 590271316.

Beyond Histones: New Substrate Proteins of Lysine Deacetylases in Arabidopsis Nuclei

Magdalena Füßl, Ines Lassowskat, Guillaume Née, Minna M. Koskela, Annika Brünje, Priyadarshini Tilak, Jonas Giese, Dario Leister, Paula Mulo, Dirk Schwarzer, Iris Finkemeier

Front Plant Sci. 2018; 9: 461. Published online 2018 Apr 10. doi: 10.3389/fpls.2018.00461

PMCID:: PMC5902713

Abstract Article PDF–2.2M

Select item 578053517.

A Proteomic-Based Approach to Study the Mechanism of Cytotoxicity Induced by Interleukin-1α and Cycloheximide

Katarzyna Macur, Jolanta Grzenkowicz-Wydra, Lucyna Konieczna, Jacek Bigda, Caterina Temporini, Sara Tengattini, Tomasz Bączek

Chromatographia. 2018; 81(1): 47–56. Published online 2017 Aug 30. doi: 10.1007/s10337-017-3382-3

PMCID:: PMC5780535

Abstract Article PDF–2.3M

Select item 574120118.

Proteomic Analysis of Human Adipose Derived Stem Cells during Small Molecule Chemical Stimulated Pre-neuronal Differentiation

Jerran Santos, Bruce K Milthorpe, Benjamin R Herbert, Matthew P Padula

Int J Stem Cells. 2017 Nov; 10(2): 193–217. doi: 10.15283/ijsc17036

PMCID:: PMC5741201

Abstract Article PDF–2.0M

Select item 570254019.

The nucleosomal surface is the main target of histone ADP-ribosylation in response to DNA damage

Kelly R. Karch, Marie-France Langelier, John M. Pascal, Benjamin A. Garcia

Mol Biosyst. Author manuscript; available in PMC 2018 Nov 21.

Published in final edited form as: Mol Biosyst. 2017 Nov 21; 13(12): 2660–2671. doi: 10.1039/c7mb00498b

PMCID:: PMC5702540

Abstract Article PDF–1.9M

Select item 542886520.

Identification of autoreactive B cells with labeled nucleosomes

Vincent Gies, Alain Wagner, Cécile Seifert, Aurélien Guffroy, Jean-D. Fauny, Anne-M. Knapp, Jean-L. Pasquali, Thierry Martin, Hélène Dumortier, Anne-S. Korganow, Pauline Soulas-Sprauel

Sci Rep. 2017; 7: 602. Published online 2017 Apr 4. doi: 10.1038/s41598-017-00664-0

PMCID:: PMC5428865

Abstract Article PDF–2.6M

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