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Select item 55404451.

Metabolic Regulation of Gene Expression by Histone Lysine β-hydroxybutyrylation

Zhongyu Xie, Di Zhang, Dongjun Chung, Zhanyun Tang, He Huang, Lunzhi Dai, Shankang Qi, Jingya Li, Gozde Colak, Yue Chen, Chunmei Xia, Chao Peng, Haibin Ruan, Matt Kirkey, Danli Wang, Lindy M. Jensen, Oh Kwang Kwon, Sangkyu Lee, Scott D. Pletcher, Minjia Tan, David B. Lombard, Kevin P. White, Hongyu Zhao, Jia Li, Robert G. Roeder, Yang Xiaoyong, Yingming Zhao

Mol Cell. Author manuscript; available in PMC 2017 Aug 2.

Published in final edited form as: Mol Cell. 2016 Apr 21; 62(2): 194–206. doi: 10.1016/j.molcel.2016.03.036

PMCID:: PMC5540445

Abstract Article PDF–1.4M

Select item 48504242.

Dynamic Competing Histone H4 K5K8 Acetylation and Butyrylation Are Hallmarks of Highly Active Gene Promoters

Afsaneh Goudarzi, Di Zhang, He Huang, Sophie Barral, Oh Kwang Kwon, Shankang Qi, Zhanyun Tang, Thierry Buchou, Anne-Laure Vitte, Tieming He, Zhongyi Cheng, Emilie Montellier, Jonathan Gaucher, Sandrine Curtet, Alexandra Debernardi, Guillaume Charbonnier, Denis Puthier, Carlo Petosa, Daniel Panne, Sophie Rousseaux, Robert G. Roeder, Yingming Zhao, Saadi Khochbin

Mol Cell. 2016 Apr 21; 62(2): 169–180. doi: 10.1016/j.molcel.2016.03.014

PMCID:: PMC4850424

Abstract Article

Select item 41191753.

The RING Finger Protein MSL2 in the MOF Complex is an E3 Ubiquitin Ligase for H2B K34 and is Involved in Crosstalk with H3 K4 and K79 Methylation

Lipeng Wu, Barry M. Zee, Yanming Wang, Benjamin A. Garcia, Yali Dou

Mol Cell. Author manuscript; available in PMC 2014 Aug 1.

Published in final edited form as: Mol Cell. 2011 Jul 8; 43(1): 132–144. doi: 10.1016/j.molcel.2011.05.015

PMCID:: PMC4119175

Abstract Article PDF–1.1M

Select item 37315474.

USP49 deubiquitinates histone H2B and regulates cotranscriptional pre-mRNA splicing

Zhuo Zhang, Amanda Jones, Heui-Yun Joo, Dewang Zhou, Ying Cao, Shaoxia Chen, Hediye Erdjument-Bromage, Matthew Renfrow, Hang He, Paul Tempst, Tim M. Townes, Keith E. Giles, Ligeng Ma, Hengbin Wang

Genes Dev. 2013 Jul 15; 27(14): 1581–1595. doi: 10.1101/gad.211037.112

PMCID:: PMC3731547

Abstract Article PDF–3.3M

Select item 34188375.

Lysine Succinylation and Lysine Malonylation in Histones

Zhongyu Xie, Junbiao Dai, Lunzhi Dai, Minjia Tan, Zhongyi Cheng, Yeming Wu, Jef D. Boeke, Yingming Zhao

Mol Cell Proteomics. 2012 May; 11(5): 100–107. Published online 2012 Mar 4. doi: 10.1074/mcp.M111.015875

PMCID:: PMC3418837

Abstract Article PDF–2.1M

Select item 31764436.

Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification

Minjia Tan, Hao Luo, Sangkyu Lee, Fulai Jin, Jeong Soo Yang, Emilie Montellier, Thierry Buchou, Zhongyi Cheng, Sophie Rousseaux, Nisha Rajagopal, Zhike Lu, Zhen Ye, Qin Zhu, Joanna Wysocka, Yang Ye, Saadi Khochbin, Bing Ren, Yingming Zhao

Cell. Author manuscript; available in PMC 2012 Sep 16.

Published in final edited form as: Cell. 2011 Sep 16; 146(6): 1016–1028. doi: 10.1016/j.cell.2011.08.008

PMCID:: PMC3176443

Abstract Article PDF–4.2M

Select item 5289287.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 69329158.

Histone proteomics reveals novel post-translational modifications in breast cancer

Angela Mena Perri, Valter Agosti, Erika Olivo, Antonio Concolino, MariaTeresa De Angelis, Laura Tammè, Claudia Vincenza Fiumara, Giovanni Cuda, Domenica Scumaci

Aging (Albany NY) 2019 Dec 15; 11(23): 11722–11755. Published online 2019 Dec 8. doi: 10.18632/aging.102577

PMCID:: PMC6932915

Abstract Article PDF–7.4M

Select item 68391939.

iTRAQ-based quantitative proteomic analysis provides insight for molecular mechanism of neuroticism

Lei Tian, Hong-Zhao You, Hao Wu, Yu Wei, Min Zheng, Lei He, Jin-Ying Liu, Shu-Zhen Guo, Yan Zhao, Ren-Lai Zhou, Xingang Hu

Clin Proteomics. 2019; 16: 38. Published online 2019 Nov 8. doi: 10.1186/s12014-019-9259-8

PMCID:: PMC6839193

Abstract Article PDF–1.7M

Select item 677843210.

Structural analysis of urinary light chains and proteomic analysis of hyaline tubular casts in light chain associated kidney disorders

Thomas Reiter, Daniela Knafl, Hermine Agis, Karl Mechtler, Ludwig Wagner, Wolfgang Winnicki

PeerJ. 2019; 7: e7819. Published online 2019 Oct 2. doi: 10.7717/peerj.7819

PMCID:: PMC6778432

Abstract Article PDF–3.4M

Select item 663724211.

Proteogenomic Analysis of Protein Sequence Alterations in Breast Cancer Cells

Iulia M. Lazar, Arba Karcini, Shreya Ahuja, Carly Estrada-Palma

Sci Rep. 2019; 9: 10381. Published online 2019 Jul 17. doi: 10.1038/s41598-019-46897-z

PMCID:: PMC6637242

Abstract Article PDF–2.8M

Select item 628003712.

Comparative proteomic analysis of normal and gliotic PVR retina and contribution of Müller glia to this profile

Karen Eastlake, Wendy E. Heywood, Phillip Banerjee, Emily Bliss, Kevin Mills, Peng T. Khaw, David Charteris, G. Astrid Limb

Exp Eye Res. 2018 Dec; 177: 197–207. doi: 10.1016/j.exer.2018.08.016

PMCID:: PMC6280037

Abstract Article

Select item 618581113.

Characterization of mucoid and serous middle ear effusions from patients with chronic otitis media: implication of different biological mechanisms?

Stéphanie Val, Marian Poley, Krueger Anna, Gustavo Nino, Kristy Brown, Marcos Pérez-Losada, Heather Gordish-Dressman, Diego Preciado

Pediatr Res. Author manuscript; available in PMC 2018 Nov 28.

Published in final edited form as: Pediatr Res. 2018 Aug; 84(2): 296–305. Published online 2018 May 28. doi: 10.1038/s41390-018-0060-6

PMCID:: PMC6185811

Abstract Article PDF–837K

Select item 598851014.

Top-down proteomic characterization of DAOY medulloblastoma tumor cell line

Claudia Martelli, Luca D’Angelo, Marta Barba, Mirko Baranzini, Ilaria Inserra, Federica Iavarone, Federica Vincenzoni, Gianpiero Tamburrini, Luca Massimi, Concezio Di Rocco, Massimo Caldarelli, Irene Messana, Fabrizio Michetti, Massimo Castagnola, Wanda Lattanzi, Claudia Desiderio

EuPA Open Proteom. 2016 Sep; 12: 13–21. Published online 2016 Apr 1. doi: 10.1016/j.euprot.2016.03.015

PMCID:: PMC5988510

Abstract Article PDF–847K

Select item 582145915.

Dissection of affinity captured LINE-1 macromolecular complexes

Martin S Taylor, Ilya Altukhov, Kelly R Molloy, Paolo Mita, Hua Jiang, Emily M Adney, Aleksandra Wudzinska, Sana Badri, Dmitry Ischenko, George Eng, Kathleen H Burns, David Fenyö, Brian T Chait, Dmitry Alexeev, Michael P Rout, Jef D Boeke, John LaCava

eLife. 2018; 7: e30094. Published online 2018 Jan 8. doi: 10.7554/eLife.30094

PMCID:: PMC5821459

Abstract Article PDF–5.6M

Select item 564138216.

Antimicrobial and Antibiofilm Effects of Human Amniotic/Chorionic Membrane Extract on Streptococcus pneumoniae

Mukesh K. Yadav, Yoon Y. Go, Shin Hye Kim, Sung-Won Chae, Jae-Jun Song

Front Microbiol. 2017; 8: 1948. Published online 2017 Oct 10. doi: 10.3389/fmicb.2017.01948

PMCID:: PMC5641382

Abstract Article PDF–8.6M

Select item 530274817.

Proteome Changes Induced by Imatinib and Novel Imatinib Derivatives in K562 Human Chronic Myeloid Leukemia Cells

Katerina Arvaniti, Anastasia Papadioti, Maria Kinigopoulou, Vassiliki Theodorou, Konstantinos Skobridis, Georgios Tsiotis

Proteomes. 2014 Sep; 2(3): 363–381. Published online 2014 Jul 22. doi: 10.3390/proteomes2030363

PMCID:: PMC5302748

Abstract Article PDF–1012K

Select item 522342818.

MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones

Sara El Kennani, Annie Adrait, Alexey K. Shaytan, Saadi Khochbin, Christophe Bruley, Anna R. Panchenko, David Landsman, Delphine Pflieger, Jérôme Govin

Epigenetics Chromatin. 2017; 10: 2. Published online 2017 Jan 10. doi: 10.1186/s13072-016-0109-x

PMCID:: PMC5223428

Abstract Article PDF–1.4M

Select item 493751319.

Quantitative Mass Spectrometry Reveals Changes in Histone H2B Variants as Cells Undergo Inorganic Arsenic-Mediated Cellular Transformation

Matthew Rea, Tingting Jiang, Rebekah Eleazer, Meredith Eckstein, Alan G. Marshall, Yvonne N. Fondufe-Mittendorf

Mol Cell Proteomics. 2016 Jul; 15(7): 2411–2422. Published online 2016 May 11. doi: 10.1074/mcp.M116.058412

PMCID:: PMC4937513

Abstract Article PDF–1.6M

Select item 450675720.

A Proteomic Comparison of Formalin-Fixed Paraffin-Embedded Pancreatic Tissue from Autoimmune Pancreatitis, Chronic Pancreatitis, and Pancreatic Cancer

Joao A Paulo, Vivek Kadiyala, Scott Brizard, Peter A Banks, Hanno Steen, Darwin L Conwell

JOP. Author manuscript; available in PMC 2015 Jul 19.

Published in final edited form as: JOP. 2013 Jul; 14(4): 405–414. Published online 2013 Jul 10.

PMCID:: PMC4506757

Abstract Article PDF–1.2M

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