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Items: 18

1.
Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses
Youn Wook Chung, Ho-Jin Gwak, Sungmin Moon, Mina Rho, Ji-Hwan Ryu
PLoS One. 2020; 15(1): e0227886. Published online 2020 Jan 24. doi: 10.1371/journal.pone.0227886
PMCID:
PMC6980644
AbstractArticlePDF–2.5M
2.
Metabolomics and Microbiomes as Potential Tools to Evaluate the Effects of the Mediterranean Diet
Qi Jin, Alicen Black, Stefanos N. Kales, Dhiraj Vattem, Miguel Ruiz-Canela, Mercedes Sotos-Prieto
Nutrients. 2019 Jan; 11(1): 207. Published online 2019 Jan 21. doi: 10.3390/nu11010207
PMCID:
PMC6356665
AbstractArticlePDF–1.3M
3.
Extrathymically generated regulatory T cells establish a niche for intestinal border-dwelling bacteria and affect physiologic metabolite levels
Clarissa Campbell, Stanislav Dikiy, Shakti K. Bhattarai, Takatoshi Chinen, Fanny Matheis, Marco Calafiore, Beatrice Hoyos, Alan Hanash, Daniel Mucida, Vanni Bucci, Alexander Y. Rudensky
Immunity. Author manuscript; available in PMC 2019 Jun 19.
Published in final edited form as: Immunity. 2018 Jun 19; 48(6): 1245–1257.e9. Published online 2018 May 29. doi: 10.1016/j.immuni.2018.04.013
PMCID:
PMC6260932
AbstractArticlePDF–997K
4.
Membrane remodelling in bacteria
Olga Bohuszewicz, Jiwei Liu, Harry H Low
J Struct Biol. Author manuscript; available in PMC 2018 Oct 2.
Published in final edited form as: J Struct Biol. 2016 Oct; 196(1): 3–14. Published online 2016 Jun 2. doi: 10.1016/j.jsb.2016.05.010
PMCID:
PMC6168058
AbstractArticlePDF–2.2M
5.
Molecular Alteration Analysis of Human Gut Microbial Composition in Graves' disease Patients
Hafiz Muhammad Ishaq, Imran Shair Mohammad, Muhammad Shahzad, Chaofeng Ma, Muhammad Asif Raza, Xiaokang Wu, Hui Guo, Peijie Shi, Jiru Xu
Int J Biol Sci. 2018; 14(11): 1558–1570. Published online 2018 Sep 7. doi: 10.7150/ijbs.24151
PMCID:
PMC6158725
AbstractArticlePDF–1.1M
6.
Impact of a 3-Months Vegetarian Diet on the Gut Microbiota and Immune Repertoire
Chenchen Zhang, Andrea Björkman, Kaiye Cai, Guilin Liu, Chunlin Wang, Yin Li, Huihua Xia, Lijun Sun, Karsten Kristiansen, Jun Wang, Jian Han, Lennart Hammarström, Qiang Pan-Hammarström
Front Immunol. 2018; 9: 908. Published online 2018 Apr 27. doi: 10.3389/fimmu.2018.00908
PMCID:
PMC5934425
AbstractArticlePDF–4.0M
7.
Gene Meter: Accurate abundance calculations of gene expression
Alexander E. Pozhitkov, Peter A. Noble
Commun Integr Biol. 2017; 10(4): e1329785. Published online 2017 Sep 6. doi: 10.1080/19420889.2017.1329785
PMCID:
PMC5595416
AbstractArticlePDF–671K
8.
The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the Candidate Superphylum Parcubacteria (OD1)
Rosa León-Zayas, Logan Peoples, Jennifer F. Biddle, Sheila Podell, Mark Novotny, James Cameron, Roger S. Lasken, Douglas H. Bartlett
Environ Microbiol. Author manuscript; available in PMC 2018 Jul 1.
Published in final edited form as: Environ Microbiol. 2017 Jul; 19(7): 2769–2784. Published online 2017 Jun 22. doi: 10.1111/1462-2920.13789
PMCID:
PMC5524542
AbstractArticlePDF–1.8M
9.
Type VI secretion systems of human gut Bacteroidales segregate into three genetic architectures, two of which are contained on mobile genetic elements
Michael J. Coyne, Kevin G. Roelofs, Laurie E. Comstock
BMC Genomics. 2016; 17: 58. Published online 2016 Jan 15. doi: 10.1186/s12864-016-2377-z
PMCID:
PMC4714493
AbstractArticlePDF–4.0M
10.
Pglyrp-Regulated Gut Microflora Prevotella falsenii, Parabacteroides distasonis and Bacteroides eggerthii Enhance and Alistipes finegoldii Attenuates Colitis in Mice
Roman Dziarski, Shin Yong Park, Des Raj Kashyap, Scot E. Dowd, Dipika Gupta
PLoS One. 2016; 11(1): e0146162. Published online 2016 Jan 4. doi: 10.1371/journal.pone.0146162
PMCID:
PMC4699708
AbstractArticlePDF–3.4M
11.
Effect of Feeding Bacillus subtilis natto on Hindgut Fermentation and Microbiota of Holstein Dairy Cows
D. J. Song, H. Y. Kang, J. Q. Wang, H. Peng, D. P. Bu
Asian-Australas J Anim Sci. 2014 Apr; 27(4): 495–502. doi: 10.5713/ajas.2013.13522
PMCID:
PMC4093534
AbstractArticlePDF–350K
12.
Extensive Microbial and Functional Diversity within the Chicken Cecal Microbiome
Martin J. Sergeant, Chrystala Constantinidou, Tristan A. Cogan, Michael R. Bedford, Charles W. Penn, Mark J. Pallen
PLoS One. 2014; 9(3): e91941. Published online 2014 Mar 21. doi: 10.1371/journal.pone.0091941
PMCID:
PMC3962364
AbstractArticlePDF–1.9M
13.
Molecular Cloning of a Novel Glucuronokinase/Putative Pyrophosphorylase from Zebrafish Acting in an UDP-Glucuronic Acid Salvage Pathway
Roman Gangl, Robert Behmüller, Raimund Tenhaken
PLoS One. 2014; 9(2): e89690. Published online 2014 Feb 28. doi: 10.1371/journal.pone.0089690
PMCID:
PMC3938481
AbstractArticlePDF–2.8M
14.
Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences
Lesley A. Ogilvie, Lucas D. Bowler, Jonathan Caplin, Cinzia Dedi, David Diston, Elizabeth Cheek, Huw Taylor, James E. Ebdon, Brian V. Jones
Nat Commun. 2013 Sep 16; 4: 2420. Published online 2013 Sep 16. doi: 10.1038/ncomms3420
PMCID:
PMC3778543
AbstractArticlePDF–1.4M
15.
Gut Microbiota Patterns Associated with Colonization of Different Clostridium difficile Ribotypes
Jure Skraban, Saso Dzeroski, Bernard Zenko, Domen Mongus, Simon Gangl, Maja Rupnik
PLoS One. 2013; 8(2): e58005. Published online 2013 Feb 28. doi: 10.1371/journal.pone.0058005
PMCID:
PMC3585249
AbstractArticlePDF–1.0M
16.
Genome sequence and description of Alistipes senegalensis sp. nov.
Ajay Kumar Mishra, Gregory Gimenez, Jean-Christophe Lagier, Catherine Robert, Didier Raoult, Pierre-Edouard Fournier
Stand Genomic Sci. 2012 Jul 30; 6(3): 1–16. Published online 2012 Jul 20. doi: 10.4056/sigs.2625821
PMCID:
PMC3558963
AbstractArticlePDF–3.1M
17.
Non-contiguous finished genome sequence and description of Alistipes timonensis sp. nov.
Jean-Christophe Lagier, Fabrice Armougom, Ajay Kumar Mishra, Thi-Tien Nguyen, Didier Raoult, Pierre-Edouard Fournier
Stand Genomic Sci. 2012 Jul 30; 6(3): 315–324. Published online 2012 Jul 20. doi: 10.4056/sigs.2685971
PMCID:
PMC3558960
AbstractArticlePDF–9.1M
18.
Shifting from a gene-centric to metabolite-centric strategy to determine the core gut microbiome
Julian R Marchesi
Bioeng Bugs. 2011 Nov-Dec; 2(6): 309–314. Published online 2011 Nov 1. doi: 10.4161/bbug.2.6.17235
PMCID:
PMC3242787
AbstractArticlePDF–1.3M

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