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Select item 68433921.

sRNA OsiA Stabilizes Catalase mRNA during Oxidative Stress Response of Deincoccus radiodurans R1

Yun Chen, Dong Xue, Wenjie Sun, Jiahui Han, Jiang Li, Ruyu Gao, Zhengfu Zhou, Wei Zhang, Ming Chen, Min Lin, Jin Wang, Kaijing Zuo

Microorganisms. 2019 Oct; 7(10): 422. Published online 2019 Oct 8. doi: 10.3390/microorganisms7100422

PMCID:: PMC6843392

Abstract Article PDF–1.7M

Select item 58178752.

Impact of Glyphosate on the Rhizosphere Microbial Communities of An EPSPS-Transgenic Soybean Line ZUTS31 by Metagenome Sequencing

Gui-Hua Lu, Xiao-Mei Hua, Jing Cheng, Yin-Ling Zhu, Gu-Hao Wang, Yan-Jun Pang, Rong-Wu Yang, Lei Zhang, Huixia Shou, Xiao-Ming Wang, Jinliang Qi, Yong-Hua Yang

Curr Genomics. 2018 Jan; 19(1): 36–49. Published online 2018 Jan. doi: 10.2174/1389202918666170705162405

PMCID:: PMC5817875

Abstract Article PDF–2.4M

Select item 52065363.

Conservation of coevolving protein interfaces bridges prokaryote–eukaryote homologies in the twilight zone

Juan Rodriguez-Rivas, Simone Marsili, David Juan, Alfonso Valencia

Proc Natl Acad Sci U S A. 2016 Dec 27; 113(52): 15018–15023. Published online 2016 Dec 13. doi: 10.1073/pnas.1611861114

PMCID:: PMC5206536

Abstract Article PDF–1.0M

Select item 47379004.

Long-Term Oil Contamination Alters the Molecular Ecological Networks of Soil Microbial Functional Genes

Yuting Liang, Huihui Zhao, Ye Deng, Jizhong Zhou, Guanghe Li, Bo Sun

Front Microbiol. 2016; 7: 60. Published online 2016 Feb 3. doi: 10.3389/fmicb.2016.00060

PMCID:: PMC4737900

Abstract Article PDF–1.9M

Select item 47125525.

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

Rosalinda D’Amore, Umer Zeeshan Ijaz, Melanie Schirmer, John G. Kenny, Richard Gregory, Alistair C. Darby, Migun Shakya, Mircea Podar, Christopher Quince, Neil Hall

BMC Genomics. 2016; 17: 55. Published online 2016 Jan 14. doi: 10.1186/s12864-015-2194-9

PMCID:: PMC4712552

Abstract Article PDF–1.2M

Select item 42995206.

Genome-wide gene order distances support clustering the gram-positive bacteria

Christopher H. House, Matteo Pellegrini, Sorel T. Fitz-Gibbon

Front Microbiol. 2014; 5: 785. Published online 2015 Jan 20. doi: 10.3389/fmicb.2014.00785

PMCID:: PMC4299520

Abstract Article PDF–8.7M

Select item 42607177.

Phylogenetic analysis and evolutionary origins of DNA polymerase X-family members

Rachelle J. Bienstock, William A. Beard, Samuel H. Wilson

DNA Repair (Amst) Author manuscript; available in PMC 2015 Oct 1.

Published in final edited form as: DNA Repair (Amst). 2014 Oct; 22: 77–88. Published online 2014 Aug 9. doi: 10.1016/j.dnarep.2014.07.003

PMCID:: PMC4260717

Abstract Article PDF–1.9M

Select item 39276078.

Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms

Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés

Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869

PMCID:: PMC3927607

Abstract Article PDF–2.0M

Select item 39095719.

Isolation and cloning of the endoglucanase gene from Bacillus pumilus and its expression in Deinococcus radiodurans

Sachin Telang, Poonam Patel, Vishwas Sarangdhar, Sheela Donde

3 Biotech. 2014 Feb; 4(1): 57–65. Published online 2013 Mar 21. doi: 10.1007/s13205-013-0127-3

PMCID:: PMC3909571

Abstract Article PDF–1.4M

Select item 385570610.

A Built-In Strategy to Mitigate Transgene Spreading from Genetically Modified Corn

Jing Li, Hui Yu, Fengzhen Zhang, Chaoyang Lin, Jianhua Gao, Jun Fang, Xiahui Ding, Zhicheng Shen, Xiaoli Xu

PLoS One. 2013; 8(12): e81645. Published online 2013 Dec 6. doi: 10.1371/journal.pone.0081645

PMCID:: PMC3855706

Abstract Article PDF–7.0M

Select item 369193511.

Periodic Distribution of a Putative Nucleosome Positioning Motif in Human, Nonhuman Primates, and Archaea: Mutual Information Analysis

Daniela Sosa, Pedro Miramontes, Wentian Li, Víctor Mireles, Juan R. Bobadilla, Marco V. José

Int J Genomics. 2013; 2013: 963956. Published online 2013 Jun 10. doi: 10.1155/2013/963956

PMCID:: PMC3691935

Abstract Article PDF–3.3M

Select item 362262712.

metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences

Christina Ander, Ole B Schulz-Trieglaff, Jens Stoye, Anthony J Cox

BMC Bioinformatics. 2013; 14(Suppl 5): S2. Published online 2013 Apr 10. doi: 10.1186/1471-2105-14-S5-S2

PMCID:: PMC3622627

Abstract Article PDF–444K

Select item 337461313.

Optimizing Read Mapping to Reference Genomes to Determine Composition and Species Prevalence in Microbial Communities

John Martin, Sean Sykes, Sarah Young, Karthik Kota, Ravi Sanka, Nihar Sheth, Joshua Orvis, Erica Sodergren, Zhengyuan Wang, George M. Weinstock, Makedonka Mitreva

PLoS One. 2012; 7(6): e36427. Published online 2012 Jun 13. doi: 10.1371/journal.pone.0036427