PMC Links for Taxonomy (Select 272634) - PMC

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Select item 66093291.

Marian Breuer, Tyler M Earnest, Chuck Merryman, Kim S Wise, Lijie Sun, Michaela R Lynott, Clyde A Hutchison, Hamilton O Smith, John D Lapek, David J Gonzalez, Valérie de Crécy-Lagard, Drago Haas, Andrew D Hanson, Piyush Labhsetwar, John I Glass, Zaida Luthey-Schulten

eLife. 2019; 8: e36842. Published online 2019 Jan 18. doi: 10.7554/eLife.36842

PMCID:: PMC6609329

Abstract Article PDF–8.4M

Select item 60173792.

Reconstructing Phylogeny by Aligning Multiple Metabolic Pathways Using Functional Module Mapping

Yiran Huang, Cheng Zhong, Hai Xiang Lin, Jianyi Wang, Yuzhong Peng

Molecules. 2018 Feb; 23(2): 486. Published online 2018 Feb 23. doi: 10.3390/molecules23020486

PMCID:: PMC6017379

Abstract Article PDF–7.0M

Select item 52105223.

OGEE v2: an update of the online gene essentiality database with special focus on differentially essential genes in human cancer cell lines

Wei-Hua Chen, Guanting Lu, Xiao Chen, Xing-Ming Zhao, Peer Bork

Nucleic Acids Res. 2017 Jan 4; 45(Database issue): D940–D944. Published online 2016 Oct 30. doi: 10.1093/nar/gkw1013

PMCID:: PMC5210522

Abstract Article PDF–128K

Select item 47066504.

The mysterious orphans of Mycoplasmataceae

Tatiana V. Tatarinova, Inna Lysnyansky, Yuri V. Nikolsky, Alexander Bolshoy

Biol Direct. 2016; 11: 2. Published online 2016 Jan 8. doi: 10.1186/s13062-015-0104-3

PMCID:: PMC4706650

Abstract Article PDF–1.6M

Select item 42995205.

Genome-wide gene order distances support clustering the gram-positive bacteria

Christopher H. House, Matteo Pellegrini, Sorel T. Fitz-Gibbon

Front Microbiol. 2014; 5: 785. Published online 2015 Jan 20. doi: 10.3389/fmicb.2014.00785

PMCID:: PMC4299520

Abstract Article PDF–8.7M

Select item 39649926.

DNASU plasmid and PSI:Biology-Materials repositories: resources to accelerate biological research

Catherine Y. Seiler, Jin G. Park, Amit Sharma, Preston Hunter, Padmini Surapaneni, Casey Sedillo, James Field, Rhys Algar, Andrea Price, Jason Steel, Andrea Throop, Michael Fiacco, Joshua LaBaer

Nucleic Acids Res. 2014 Jan 1; 42(Database issue): D1253–D1260. Published online 2013 Nov 12. doi: 10.1093/nar/gkt1060

PMCID:: PMC3964992

Abstract Article PDF–8.5M

Select item 39276077.

Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms

Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés

Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869

PMCID:: PMC3927607

Abstract Article PDF–2.0M

Select item 37086838.

Biological Database of Images and Genomes: tools for community annotations linking image and genomic information

Andrew T Oberlin, Dominika A Jurkovic, Mitchell F Balish, Iddo Friedberg

Database (Oxford) 2013; 2013: bat016. Published online 2013 Apr 2. doi: 10.1093/database/bat016

PMCID:: PMC3708683

Abstract Article PDF–534K

Select item 36877839.

Marked alterations in the distal gut microbiome linked to diet-induced obesity

Peter J. Turnbaugh, Fredrik Backhed, Lucinda Fulton, Jeffrey I. Gordon

Cell Host Microbe. Author manuscript; available in PMC 2013 Jun 20.

Published in final edited form as: Cell Host Microbe. 2008 Apr 17; 3(4): 213–223. doi: 10.1016/j.chom.2008.02.015

PMCID:: PMC3687783

Abstract Article PDF–1.3M

Select item 362262710.

metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences

Christina Ander, Ole B Schulz-Trieglaff, Jens Stoye, Anthony J Cox

BMC Bioinformatics. 2013; 14(Suppl 5): S2. Published online 2013 Apr 10. doi: 10.1186/1471-2105-14-S5-S2

PMCID:: PMC3622627

Abstract Article PDF–444K

Select item 355964611.

Exoproteome and Secretome Derived Broad Spectrum Novel Drug and Vaccine Candidates in Vibrio cholerae Targeted by Piper betel Derived Compounds

Debmalya Barh, Neha Barve, Krishnakant Gupta, Sudha Chandra, Neha Jain, Sandeep Tiwari, Nidia Leon-Sicairos, Adrian Canizalez-Roman, Anderson Rodrigues dos Santos, Syed Shah Hassan, Síntia Almeida, Rommel Thiago Jucá Ramos, Vinicius Augusto Carvalho de Abreu, Adriana Ribeiro Carneiro, Siomar de Castro Soares, Thiago Luiz de Paula Castro, Anderson Miyoshi, Artur Silva, Anil Kumar, Amarendra Narayan Misra, Kenneth Blum, Eric R. Braverman, Vasco Azevedo

PLoS One. 2013; 8(1): e52773. Published online 2013 Jan 30. doi: 10.1371/journal.pone.0052773

PMCID:: PMC3559646

Abstract Article PDF–651K

Select item 348825512.

Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast

Christian Tagwerker, Christopher L. Dupont, Bogumil J. Karas, Li Ma, Ray-Yuan Chuang, Gwynedd A. Benders, Adi Ramon, Mark Novotny, Michael G. Montague, Pratap Venepally, Daniel Brami, Ariel Schwartz, Cynthia Andrews-Pfannkoch, Daniel G. Gibson, John I. Glass, Hamilton O. Smith, J. Craig Venter, Clyde A. Hutchison, III

Nucleic Acids Res. 2012 Nov; 40(20): 10375–10383. Published online 2012 Aug 30. doi: 10.1093/nar/gks823

PMCID:: PMC3488255

Abstract Article PDF–3.4M

Select item 329637213.

The Effect of Chaperonin Buffering on Protein Evolution

Tom A. Williams, Mario A. Fares

Genome Biol Evol. 2010; 2: 609–619. Published online 2010 Jul 21. doi: 10.1093/gbe/evq045

PMCID:: PMC3296372

Abstract Article PDF–296K

Select item 279815814.

Assessing the Quality of Whole Genome Alignments in Bacteria

Firas Swidan, Ron Shamir

Adv Bioinformatics. 2009; 2009: 749027. Published online 2009 Nov 15. doi: 10.1155/2009/749027

PMCID:: PMC2798158

Abstract Article PDF–608K

Select item 269765415.

The Mycoplasma conjunctivae genome sequencing, annotation and analysis

Sandra P Calderon-Copete, George Wigger, Christof Wunderlin, Tobias Schmidheini, Joachim Frey, Michael A Quail, Laurent Falquet

BMC Bioinformatics. 2009; 10(Suppl 6): S7. Published online 2009 Jun 16. doi: 10.1186/1471-2105-10-S6-S7

PMCID:: PMC2697654

Abstract Article PDF–828K

Select item 261419616.

Minimum Contradiction Matrices in Whole Genome Phylogenies

Marc Thuillard

Evol Bioinform Online. 2008; 4: 237–247. Published online 2008 Jul 21. doi: 10.4137/ebo.s909

PMCID:: PMC2614196

Abstract Article PDF–498K

Select item 185231617.

Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12

Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter Ortoleva

Algorithms Mol Biol. 2007; 2: 2. Published online 2007 Mar 30. doi: 10.1186/1748-7188-2-2

PMCID:: PMC1852316

Abstract Article PDF–707K

Select item 23336718.

Ultrastructural study of Mycoplasma pneumoniae in organ culture.

M H Wilson, A M Collier

J Bacteriol. 1976 Jan; 125(1): 332–339. doi: 10.1128/jb.125.1.332-339.1976

PMCID:: PMC233367

Summary Page Browse PDF–2.5M

Select item 18664419.

Evidence That Plant-Like Genes in Chlamydia Species Reflect an Ancestral Relationship between Chlamydiaceae, Cyanobacteria, and the Chloroplast

Fiona S.L. Brinkman, Jeffrey L. Blanchard, Artem Cherkasov, Yossef Av-Gay, Robert C. Brunham, Rachel C. Fernandez, B. Brett Finlay, Sarah P. Otto, B.F. Francis Ouellette, Patrick J. Keeling, Ann M. Rose, Robert E.W. Hancock, Steven J.M. Jones

Genome Res. 2002 Aug; 12(8): 1159–1167. doi: 10.1101/gr.341802

Correction in:: Genome Res. 2002 Oct; 12(10): 1624.

PMCID:: PMC186644

Abstract Article PDF–175K

Select item 18621220.

Spatial arrangement of gene products of the P1 operon in the membrane of Mycoplasma pneumoniae.

G Layh-Schmitt, R Herrmann

Infect Immun. 1994 Mar; 62(3): 974–979. doi: 10.1128/iai.62.3.974-979.1994

PMCID:: PMC186212

Summary Page Browse PDF–1.4M

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