PMC Links for Taxonomy (Select 454171) - PMC

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Items: 17

Select item 66446311.

Microbial taxonomical composition in spruce phyllosphere, but not community functional structure, varies by geographical location

Yunshi Li, Xiukun Wu, Wanfu Wang, Minghao Wang, Changming Zhao, Tuo Chen, Guangxiu Liu, Wei Zhang, Shiweng Li, Huaizhe Zhou, Minghui Wu, Ruiqi Yang, Gaosen Zhang

PeerJ. 2019; 7: e7376. Published online 2019 Jul 19. doi: 10.7717/peerj.7376

PMCID:: PMC6644631

Abstract Article PDF–3.4M

Select item 63274942.

CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

Alexandra Zaharia, Bernard Labedan, Christine Froidevaux, Alain Denise

BMC Bioinformatics. 2019; 20: 19. Published online 2019 Jan 10. doi: 10.1186/s12859-018-2542-2

PMCID:: PMC6327494

Abstract Article PDF–1.5M

Select item 63080053.

“Duckweed-Microbe Co-Cultivation Method” for Isolating a Wide Variety of Microbes Including Taxonomically Novel Microbes

Yasuhiro Tanaka, Hideyuki Tamaki, Kazuya Tanaka, Erina Tozawa, Hiroaki Matsuzawa, Tadashi Toyama, Yoichi Kamagata, Kazuhiro Mori

Microbes Environ. 2018 Dec; 33(4): 402–406. Published online 2018 Nov 7. doi: 10.1264/jsme2.ME18067

PMCID:: PMC6308005

Abstract Article PDF–327K

Select item 60667334.

Trichoderma harzianum MTCC 5179 impacts the population and functional dynamics of microbial community in the rhizosphere of black pepper (Piper nigrum L.)

Palaniyandi Umadevi, Muthuswamy Anandaraj, Vivek Srivastav, Sailas Benjamin

Braz J Microbiol. 2018 Jul-Sep; 49(3): 463–470. Published online 2017 Nov 29. doi: 10.1016/j.bjm.2017.05.011

PMCID:: PMC6066733

Abstract Article PDF–1.2M

Select item 59609725.

Stable Isotope Probing for Microbial Iron Reduction in Chocolate Pots Hot Spring, Yellowstone National Park

Nathaniel W. Fortney, Shaomei He, Ajinkya Kulkarni, Michael W. Friedrich, Charlotte Holz, Eric S. Boyd, Eric E. Roden

Appl Environ Microbiol. 2018 Jun 1; 84(11): e02894-17. Prepublished online 2018 Mar 30. Published online 2018 May 17. doi: 10.1128/AEM.02894-17

PMCID:: PMC5960972

Abstract Article PDF–2.0M

Select item 56290416.

Draft Genome Sequences of Two Uncultured Armatimonadetes Associated with a Microcystis sp. (Cyanobacteria) Isolate

Jason N. Woodhouse, A. Katharina Makower, Hans-Peter Grossart, Elke Dittmann

Genome Announc. 2017 Oct; 5(40): e00717-17. Published online 2017 Oct 5. doi: 10.1128/genomeA.00717-17

PMCID:: PMC5629041

Abstract Article PDF–122K

Select item 51835997.

SSUnique: Detecting Sequence Novelty in Microbiome Surveys

Michael D. J. Lynch, Josh D. Neufeld

mSystems. 2016 Nov-Dec; 1(6): e00133-16. Published online 2016 Dec 20. doi: 10.1128/mSystems.00133-16

PMCID:: PMC5183599

Abstract Article PDF–2.1M

Select item 51126398.

Illumina sequencing-based community analysis of bacteria associated with different bryophytes collected from Tibet, China

Jing Yan Tang, Jing Ma, Xue Dong Li, Yan Hong Li

BMC Microbiol. 2016; 16: 276. Published online 2016 Nov 16. doi: 10.1186/s12866-016-0892-3

PMCID:: PMC5112639

Abstract Article PDF–3.1M

Select item 50077859.

Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis

Sagar M. Utturkar, W. Nathan Cude, Michael S. Robeson, Jr., Zamin K. Yang, Dawn M. Klingeman, Miriam L. Land, Steve L. Allman, Tse-Yuan S. Lu, Steven D. Brown, Christopher W. Schadt, Mircea Podar, Mitchel J. Doktycz, Dale A. Pelletier

Appl Environ Microbiol. 2016 Sep 15; 82(18): 5698–5708. Prepublished online 2016 Jul 15. Published online 2016 Aug 30. doi: 10.1128/AEM.01285-16

PMCID:: PMC5007785

Abstract Article PDF–1.8M

Select item 495917610.

Articles of Significant Interest Selected from This Issue by the Editors

Appl Environ Microbiol. 2016 Jun 15; 82(12): 3439. Published online 2016 May 31. doi: 10.1128/AEM.01204-16

PMCID:: PMC4959176

Article PDF–131K

Select item 495916911.

The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone

Kevin C. Lee, Matthew B. Stott, Peter F. Dunfield, Curtis Huttenhower, Ian R. McDonald, Xochitl C. Morgan

Appl Environ Microbiol. 2016 Jun 15; 82(12): 3572–3581. Prepublished online 2016 Apr 8. Published online 2016 May 31. doi: 10.1128/AEM.00139-16

PMCID:: PMC4959169

Abstract Article PDF–2.2M

Select item 475179312.

Identification and Characterization of a New 7-Aminocephalosporanic Acid Deacetylase from Thermophilic Bacterium Alicyclobacillus tengchongensis

Jun-Mei Ding, Ting-Ting Yu, Nan-Yu Han, Jia-Lin Yu, Jun-Jun Li, Yun-Juan Yang, Xiang-Hua Tang, Bo Xu, Jun-Pei Zhou, Hong-Zhi Tang, Zun-Xi Huang

J Bacteriol. 2016 Jan 15; 198(2): 311–320. Prepublished online 2015 Nov 2. Published online 2015 Dec 29. doi: 10.1128/JB.00471-15

PMCID:: PMC4751793

Abstract Article PDF–2.5M

Select item 410352113.

The Combination of Functional Metagenomics and an Oil-Fed Enrichment Strategy Revealed the Phylogenetic Diversity of Lipolytic Bacteria Overlooked by the Cultivation-Based Method

Takashi Narihiro, Aya Suzuki, Kazuaki Yoshimune, Tomoyuki Hori, Tamotsu Hoshino, Isao Yumoto, Atsushi Yokota, Nobutada Kimura, Yoichi Kamagata

Microbes Environ. 2014 Jun; 29(2): 154–161. Published online 2014 May 23. doi: 10.1264/jsme2.ME14002

PMCID:: PMC4103521

Abstract Article PDF–645K

Select item 407268614.

The First Complete Genome Sequence of the Class Fimbriimonadia in the Phylum Armatimonadetes

Zi-Ye Hu, Yue-Zhu Wang, Wan-Taek Im, Sheng-Yue Wang, Guo-Ping Zhao, Hua-Jun Zheng, Zhe-Xue Quan

PLoS One. 2014; 9(6): e100794. Published online 2014 Jun 26. doi: 10.1371/journal.pone.0100794

PMCID:: PMC4072686

Abstract Article PDF–953K

Select item 406939315.

Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes

Kevin C-Y Lee, Xochitl C Morgan, Peter F Dunfield, Ivica Tamas, Ian R McDonald, Matthew B Stott

ISME J. 2014 Jul; 8(7): 1522–1533. Published online 2014 Jan 30. doi: 10.1038/ismej.2013.251

PMCID:: PMC4069393

Abstract Article PDF–1.9M

Select item 339890416.

Complexity and Variability of Gut Commensal Microbiota in Polyphagous Lepidopteran Larvae

Xiaoshu Tang, Dalial Freitak, Heiko Vogel, Liyan Ping, Yongqi Shao, Erika Arias Cordero, Gary Andersen, Martin Westermann, David G. Heckel, Wilhelm Boland

PLoS One. 2012; 7(7): e36978. Published online 2012 Jul 17. doi: 10.1371/journal.pone.0036978