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Links from Protein

Items: 7

1.

phage portal protein

This bacteriophage protein forms a gateway that enables DNA passage during packaging and ejection of the phage genome. It also forms the junction between the phage head (capsid) and the tail proteins. During SPP1 morphogenesis, the portal protein, Gp6, participates in the procapsid assembly reaction [1,2]. In the mature SPP1 virion, Gp6 exists as a dodecamer, while recombinant SPP1 Gp6 has been shown to form 13-subunit assemblies [1,3]. This protein is common to Siphoviridae (phages with long non-contractile tails) and Myoviridae (phages with contractile tails). It is also found in a number of bacterial species. This family also includes the old Pfam family Phage_min_cap (PF:PF05126). RC Paper describing PDB structure 2jes [1]. 11501993. Structural organisation of the head-to-tail interface of a. bacterial virus.. Lurz R, Orlova EV, Gunther D, Dube P, Droge A, Weise F, van Heel. M, Tavares P;. J Mol Biol 2001;310:1027-1037.. [2]. 25991862. Structural rearrangements in the phage head-to-tail interface. during assembly and infection.. Chaban Y, Lurz R, Brasiles S, Cornilleau C, Karreman M,. Zinn-Justin S, Tavares P, Orlova EV;. Proc Natl Acad Sci U S A. 2015;112:7009-7014.. [3]. 17363899. Structural framework for DNA translocation via the viral portal. protein.. Lebedev AA, Krause MH, Isidro AL, Vagin AA, Orlova EV, Turner J,. Dodson EJ, Tavares P, Antson AA;. EMBO J. 2007;26:1984-1994. (from Pfam)

Date:
2024-07-08
Family Accession:
NF016988.4
Method:
HMM
2.
new record, indexing in progress
Family Accession:
3.
new record, indexing in progress
Family Accession:
4.

phage portal protein

This HMM represents one of several distantly related families of phage portal protein. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. It functions as a dodecamer of a single polypeptide of average mol. wt. of 40-90 KDa.

GO Terms:
Molecular Function:
structural molecule activity (GO:0005198)
Cellular Component:
viral portal complex (GO:0046798)
Biological Process:
DNA transport (GO:0051027)
Date:
2021-04-27
Family Accession:
TIGR01538.1
Method:
HMM
5.

phage portal protein

phage portal protein belonging to the SPP1-like portal protein family forms the portal vertex of the capsid; the portal plays critical roles in head assembly, genome packaging, neck/tail attachment, and genome ejection

Date:
2023-08-29
Family Accession:
10524044
Method:
Sparcle
6.
new record, indexing in progress
Family Accession:
7.
new record, indexing in progress
Family Accession:
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