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SRX11038660: 3RADseq of Stenopelmatus faulkneri
1 ILLUMINA (Illumina HiSeq 2500) run: 396,522 spots, 57.1M bases, 16.8Mb downloads

Design: 3RADseq library digested with the restriction enzymes XbaI, EcoRI and NheI
Submitted by: Estacion Biologica de Donana (CSIC)
Study: Extensive species diversification and marked geographic phylogenetic structure in the Mesoamerican genus Stenopelmatus (Orthoptera: Stenopelmatidae: Stenopelmatinae) revealed by mitochondrial and nuclear 3RAD data
show Abstracthide Abstract
The Jerusalem cricket subfamily Stenopelmatinae is distributed from southwestern Canada through the western half of the United States as far south as Ecuador. Recently, the generic classification of this subfamily was updated to contain two genera, the western North American Ammopelmatus and the Mexican and Central and northern South American Stenopelmatus. The taxonomy of the latter genus was also revised, with 5, 13 and 14 species being validated, declared as nomen dubium, and described as new, respectively. Despite this effort, the systematics of Stenopelmatus still is far from complete. Here, we generated sequences of the DNA barcoding locus and performed two distinct DNA sequence-based approaches to assess the species' limits among several populations of Stenopelmatus, with emphasis on populations from central and southeast Mexico. We then reconstructed the phylogenetic relationships among representative species of the main clades within the genus using nuclear 3RAD data, and carried out a molecular clock analysis to investigate its biogeographic history. The two DNA sequence-based approaches consistently recovered 34 putative species, several of which apparently are undescribed. Our estimates of phylogeny confirmed the recent generic update of Stenopelmatinae, and revealed a marked geographic phylogenetic structure within Stenopelmatus. Based on our results, we propose the existence of four species-groups within the genus (the faulkneri, talpa, Central America and piceiventris species-groups). The geographic distribution of these species-groups and our molecular clock estimates appear to be congruent with the geological processes that took place in the Mexican Transition zone, particularly since the Neogene. Our study emphasizes the necessity to continue performing more taxonomic and phylogenetic studies on Stenopelmatus to clarify its actual species richness and its evolutionary history in Mesoamerica.
Sample:
SAMN19313311 • SRS9107939 • All experiments • All runs
Library:
Name: F2341_R1
Instrument: Illumina HiSeq 2500
Strategy: RAD-Seq
Source: GENOMIC
Selection: Restriction Digest
Layout: SINGLE
Runs: 1 run, 396,522 spots, 57.1M bases, 16.8Mb
Run# of Spots# of BasesSizePublished
SRR14700597396,52257.1M16.8Mb2021-12-01

ID:
14684924

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