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SRX23232498: Caloenas_nicobarica_YPM_12336
1 ILLUMINA (Illumina HiSeq 3000) run: 109,558 spots, 19.1M bases, 6.6Mb downloads

Design: UCE dataset
Submitted by: Yale University
Study: Species Status and Phylogenetic Relationships of the Enigmatic Negros Fruit Dove Ptilinopus arcanus (Aves: Columbidae)
show Abstracthide Abstract
The Negros Fruit Dove (Ptilinopus arcanus) is an enigmatic bird known only from a single specimen collected on Negros Island, Philippines in 1953. We extracted and sequenced ultra-conserved elements (UCEs) from historic toe pad samples of the type specimen of P. arcanus and 27 other species of ptilinopine doves to investigate the species status and phylogenetic relationships of this taxon. We establish that arcanus represents a valid species, resolve its phylogenetic position at the base of the radiation of 'core' Ptilinopus fruit doves, and estimate that arcanus diverged from its most recent common ancestor several million years before Negros Island emerged from the seafloor. We also perform an ancestral range reconstruction to evaluate the effect of different altitudinal preferences on the putative historical range of this species, and we discuss how these findings can inform future efforts to relocate and potentially conserve this species.
Sample:
SAMN38504770 • SRS20155223 • All experiments • All runs
Library:
Name: Caloenas_nicobarica_YPM_12336
Instrument: Illumina HiSeq 3000
Strategy: WGS
Source: GENOMIC
Selection: PCR
Layout: SINGLE
Runs: 1 run, 109,558 spots, 19.1M bases, 6.6Mb
Run# of Spots# of BasesSizePublished
SRR27563384109,55819.1M6.6Mb2024-01-31

ID:
31396906

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