RNAseq of Embiotoca jacksoni brain and muscle - SRA

SRX11895085: RNAseq of Embiotoca jacksoni brain and muscle
1 ILLUMINA (Illumina HiSeq 4000) run: 16.9M spots, 1.7G bases, 584.2Mb downloads

Design: We extracted RNA using the column-based Qiagen RNeasy Mini extraction kit and stored extracted samples in DEPC treated H20 at -80C until library preparation. To prepare RNA for sequencing, we created cDNA libraries using the New England Biolabs NEBNext Ultra II RNA Library Prep kit. Prepared libraries were sequenced on an Illumina HiSeq 4000 (150bp SE) at the QB3 Vincent J. Coates Genomics Sequencing Laboratory at the University of California, Berkeley.

Submitted by: University of California Santa Cruz

Study: Differential Brain Gene Expression of Embiotoca jacksoni under Ocean Acidification

PRJNA757398 • SRP333880 • All experiments • All runs

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In this study we constructed a combined brain/muscle transcriptome and then tested for differential brain gene expression between Embiotoca jacksoni individuals exposed to different acidification regimes.

Sample: replicate_2B

SAMN20959974 • SRS9906505 • All experiments • All runs

Organism: Embiotoca jacksoni

Library:

Name: EJA_2017_09_brain

Instrument: Illumina HiSeq 4000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Runs: 1 run, 16.9M spots, 1.7G bases, 584.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR15597372	16,931,799	1.7G	584.2Mb	2021-08-24

ID:: 15812862

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