GSM5714281: ZicR2H; Hydra vulgaris; RNA-Seq - SRA

SRX13301652: GSM5714281: ZicR2H; Hydra vulgaris; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 24.4M spots, 2.6G bases, 886.1Mb downloads

External Id: GSM5714281_r1

Submitted by: iGE3 Genomics Platform, University of Geneva

Study: The transcription factor Zic4 promotes tentacle formation and prevents epithelial transdifferentiation in Hydra.

PRJNA785876 • SRP349122 • All experiments • All runs

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A Zic4-dependent switch in Hydra turns tentacle into foot cells. Overall design: The experiments have been designed to analyze the effect of the transcription factor Zic4 in different tissues of Hydra (head and body column).

Sample: ZicR2H

SAMN23587620 • SRS11211234 • All experiments • All runs

Organism: Hydra vulgaris

Library:

Name: GSM5714281

Instrument: Illumina HiSeq 4000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: Total RNA was extracted from head and body column tissue of control and Zic4 RNAi animals. 20 Hydra were used per condition and RNA extracted with the E.Z.N.A. total RNA kit I (Omega), following the manufacturer's instructions. RNA libraries were prepared for sequencing using Illumina TruSeqHT stranded mRNA kit

Runs: 1 run, 24.4M spots, 2.6G bases, 886.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR17117090	24,409,068	2.6G	886.1Mb	2023-01-01

ID:: 18192376

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Sequence Read Archive

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