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SRX2250875: Mock JF8 - updated
9 PACBIO_SMRT (PacBio RS II) runs: 1.5M spots, 13.3G bases, 44.6Gb downloads

Design: Mixture of 8 species: Escherichia coli MG1655, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides vulgatus ATCC 8492, Collinsella aerofaciens ATCC 25986, Clostridium bolteae ATCC BAA-613, and Ruminococcus gnavus ATCC 29149
Submitted by: Icahn School of Medicine at Mount Sinai
Study: Mixture of 8 species: Escherichia coli MG1655, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides vulgatus ATCC 8492, Collinsella aerofaciens ATCC 25986, Clostridium bolteae ATCC BAA-613, a
show Abstracthide Abstract
The goal is to evaluate different metagenomic binning methods with a mock community with background truth. Among the eight species, four are Bacteroides. The sequences were assembled from a "mock" community consisting of reads combined from 8 separate sequencing runs of individual isolates: Escherichia coli MG1655, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides vulgatus ATCC 8492, Collinsella aerofaciens ATCC 25986, Clostridium bolteae ATCC BAA-613, and Ruminococcus gnavus ATCC 29149. Reads from all 8 species were first combined, then assembled as a single set of reads.
Sample: Mock JF8
SAMN05780989 • SRS1699970 • All experiments • All runs
Organism: mixed sample
Library:
Name: JF8
Instrument: PacBio RS II
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Spot descriptor:
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Runs: 9 runs, 1.5M spots, 13.3G bases, 44.6Gb
Run# of Spots# of BasesSizePublished
SRR4429746163,4821.3G4.3Gb2016-10-21
SRR4429747163,482911M3.1Gb2016-10-21
SRR4429748163,4821.3G4.4Gb2016-10-21
SRR4429749163,4821.1G3.8Gb2016-10-21
SRR4429750163,4821.6G5.3Gb2016-10-21
SRR4429751163,4822.4G8.1Gb2016-10-21
SRR4429752163,4821.2G4Gb2016-10-21
SRR4429755163,4821.9G6.4Gb2016-10-21
SRR4431947163,4821.5G5.1Gb2016-10-21

ID:
3300544

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