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SRX9412037: HT sequencing of synthetic AAV2: virus DNA
1 ILLUMINA (NextSeq 500) run: 955,156 spots, 286.5M bases, 116.4Mb downloads

Design: AAV variant (single mutant assay pre-design round)
Submitted by: Harvard University
Study: Deep diversification of AAV capsid proteins by machine learning
show Abstracthide Abstract
We apply deep learning to design novel adeno-associated virus (AAV) capsid proteins, a challenging target of great utility for gene therapy. Focusing on a 28-amino acid segment spanning buried and exposed regions, we generated 201,426 highly diverse variants of the AAV2 wildtype (WT) sequence, yielding 110,689 viable synthetic capsids, 57,348 of which surpass the average diversity of natural AAV serotype sequences with 12-29 mutations across this region.
Sample: Single mutant assay
SAMN16619496 • SRS7628585 • All experiments • All runs
Library:
Name: GEN00082869
Instrument: NextSeq 500
Strategy: AMPLICON
Source: SYNTHETIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 955,156 spots, 286.5M bases, 116.4Mb
Run# of Spots# of BasesSizePublished
SRR12959374955,156286.5M116.4Mb2020-11-16

ID:
12291527

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