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SRX11825345: GSM5529111: 15_G71D_Infect7d_PBMC; Macaca mulatta; RNA-Seq
4 ILLUMINA (Illumina HiSeq 3000) runs: 21M spots, 2.1G bases, 747.4Mb downloads

Submitted by: NCBI (GEO)
Study: Increased IL-6 expression in microglia prior to detection of virus in the brain of rhesus macaques with acute SIVmac239 infection
show Abstracthide Abstract
Knowledge on immune activation in the brain during acute HIV infection is crucial for the prevention and treatment of HIV associated neurological disorders (HAND), which is prevalent in people living with HIV (PLWH), even in those treated with antiretroviral therapy. In this study, we determined regional brain (basal ganglia, thalamus, and frontal cortex) immune and virological profiles 7 and 14 days after infection (dpi) with SIVmac239 in rhesus macaques. Basal ganglia and thalamus were infected earlier (7dpi) than frontal cortex (14 dpi) and contained higher quantities of viruses than the latter. Increased immune activation of astrocytes and significant infiltration of monocytes/macrophages in thalamus at 14 dpi coincided with elevated plasma viral load, while SIV was only localized within monocytes/macrophages. RNA signatures of pro-inflammatory responses including IL-6 were detected at 7 dpi in microglia and interestingly preceded reliable detection of virus in tissues and was maintained long term in the brain of chronically infected macaques. Countering the pro-inflammatory response, the anti-inflammatory response was detectable, but delayed till 14 dpi, as TGF-ß expression in significantly higher numbers of perivascular monocytes/macrophages; though this anti-inflammatory response was not detected in chronic infection. Our data provide evidence that the interplay of acute pro-inflammatory and anti-inflammatory responses in the brain likely contribute to the overt neuro-inflammation, but that inflammatory markers such as IL-6 may serve as hyperacute biomarkers of low-level brain infection. Overall design: 11 adule male rhesus macaques were used. 8 were infected with SIVmac239. 3 were sacrificed on day 7, 5 were sacrificed on day 14. 3 were uninfected controls. Brain tissue from the frontal cortex and blood was sampled at necropsy. Basal ganglia and thalamus tissue were also collected from one animal.
Sample: 15_G71D_Infect7d_PBMC
SAMN20860916 • SRS9838996 • All experiments • All runs
Organism: Macaca mulatta
Library:
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was isolated from the frontal cortex tissue preserved in RNAlater using the RNeasy Mini kit (Qiagen) with on-column DNase digestion. RNA quality was assessed using an Agilent Bioanalyzer and 10 ng of total RNA was used as input for cDNA synthesis using the Clontech SMART-Seq v4 Ultra Low Input RNA kit (Takara Bio) according to the manufacturer's instructions. Amplified cDNA was fragmented and appended with dual-indexed bar codes using the NexteraXT DNA Library Preparation kit (Illumina). Libraries were validated by capillary electrophoresis on an Agilent 4200 TapeStation, pooled at equimolar concentrations, and sequenced on an Illumina HiSeq3000 at 100SR
Experiment attributes:
GEO Accession: GSM5529111
Links:
Runs: 4 runs, 21M spots, 2.1G bases, 747.4Mb
Run# of Spots# of BasesSizePublished
SRR155266472,436,296246.1M86.3Mb2024-08-17
SRR155266485,401,123545.5M194.8Mb2024-08-17
SRR155266498,079,798816.1M287Mb2024-08-17
SRR155266505,084,269513.5M179.3Mb2024-08-17

ID:
15742280

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