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SRX042388: GBMF Marine Phage Sequencing Project
2 LS454 (454 GS FLX Titanium) runs: 238,412 spots, 112.9M bases, 255.5Mb downloads

UUID: 6268df50-bf08-4f95-9330-8cd276dcdb95
Design: International collaboration to sequence, assemble, and annotate approximately 200 diverse marine phage/virus genomes and to sequence approximately 50 viral metagenomes from an array of marine environments. DNA sequencing using 454 technology.
Submitted by: Broad Institute (BI)
Study: Juan de Fuca Ridge hydrothermal vent uncultured phage metagenome
PRJNA47471 • SRP005804 • All experiments • All runs
show Abstracthide Abstract
Sample FS699Hulk isolated from Diffuse flow hydrothermal fluid (seawater); sample description: Juan de Fuca ridge, Endeavour hydrothermal vent field, Hulk vent. Chloroform and nuclease treatment
Sample: Generic sample from hydrothermal vent metagenome
SAMN00215857 • SRS172788 • All experiments • All runs
Organism: hydrothermal vent metagenome
Library:
Name: 454-3535
Instrument: 454 GS FLX Titanium
Strategy: WGS
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Spot descriptor:
          barcode
Group tagBasecalls
BerlinTATTGAC
12  forward

Experiment attributes: (show all 6 attributes...) (hide...)
analysis_type: DNA Viral 454 Alignment and Assembly
gssr_id: 42276.1
lsid: BROAD:SEQUENCING_SAMPLE:42276.1
material_type: Genomic DNA
project: G2810
work_request: 20437
Pipeline: show...hide...
NameStepProgramVersion
base caller2009-12-04 06:51:47.0454BaseCaller2.0.01.12
Runs: 2 runs, 238,412 spots, 112.9M bases, 255.5Mb
Run# of Spots# of BasesSizePublished
SRR100484231,246109.6M247.6Mb2011-06-30
SRR1071137,1663.3M7.9Mb2011-06-30

ID:
50660

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