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SRX15807040: RNA-Seq of LCLs from the 1000 Genomes Project: HG03823
1 ILLUMINA (Illumina NovaSeq 6000) run: 27.2M spots, 8.2G bases, 2.4Gb downloads

Design: Frozen cell pellets ( 5 million cells per sample) were recovered by Coriell and cultured for 4 days (see Coriell LCL culture FAQ: https://www.coriell.org/0/sections/support/global/Lymphoblastoid.aspx). After growth, cells were transferred to a growth-limiting shipping media and were shipped directly to GENEWIZ (same-day delivery) for RNA isolation, library prep, and sequencing. Cells were spun down, then total RNA was extracted from cell pellets using Qiagen RNeasy Plus Universal mini kit following manufacturers instructions. The RNA sequencing libraries were prepared using the NEBNext Ultra II RNA Library Prep Kit for Illumina using manufacturers instructions, and the polyA enrichment workflow. Sequencing libraries were validated on the Agilent TapeStation and quantified by using Qubit 2.0 Fluorometer as well as by quantitative PCR. Sequencing libraries were multiplexed in batches of 48 samples and loaded on the flow cell on the Illumina NovaSeq 6000 instrument according to manufacturers instructions. Samples were sequenced using a 2x150 Pair-End configuration.
Submitted by: Johns Hopkins University
Study: RNA-sequencing of lymphoblastoid cell lines from 731 globally diverse individuals from the 1000 Genomes Project
show Abstracthide Abstract
Summary: We generated RNA-sequencing data from lymphoblastoid cell lines derived from 731 unrelated individuals from the 1000 Genomes Project. Samples are roughly evenly distributed among 26 globally diverse subpopulations. This dataset provides a broad view of human gene expression diversity, while serving as a resource for discovery of genetic variation that influences gene expression and splicing in this globally diverse cohort. Design: All cell lines were obtained from the Coriell Institute for Medical Research with consent to deposit sequencing reads and sample metadata. RNA extraction, RNA-Seq PolyA selection library preparation, and sequencing was performed by GENEWIZ (Azenta Life Sciences). 24 samples were sequenced in triplicate.
Sample: HG03823,BEB,SAS,female
SAMN29221347 • SRS13499057 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: HG03823_batch13_rep1
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 27.2M spots, 8.2G bases, 2.4Gb
Run# of Spots# of BasesSizePublished
SRR1976241627,208,9828.2G2.4Gb2023-11-01

ID:
22461204

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