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SRX17133728: illumina-seq of Melomys leucogaster
1 ILLUMINA (Illumina MiSeq) run: 533,200 spots, 120.4M bases, 42.3Mb downloads

Design: ssDNA library hybridized with customized probe set for PCR viral enrichment
Submitted by: Leibniz Institute for Zoo and Wildlife Research
Study: A Recent Gibbon Ape Leukemia Virus Germline Integrations in a Rodent from New Guinea
show Abstracthide Abstract
We identified two rodents from Australia (Melomys burtoni) and Papua New Guinea (M. leucogaster) harboring Gibbon Ape Leukemia Virus - like (GALV-like) retrovirus. M. leucogaster harbored a genomically complete gammaretrovirus with a shared integration site among individuals (isolates 249, 290, 291, 292 and 300). We named this cMWMV (complete Melomys Woolly Monkey Virus). However this integration was only present in some individuals of the species indicating this retrovirus is at the earliest stages of germline colonization of the Melomys genome, providing a new model of early stage genome colonization. The M. burtoni sequence (isolate 204) obtained is not cMWMV but a related retrovirus like the defective M. burtoni viruses MbRV and MelWMV. We termed this MelWMV variant MelWMV-NG (MelWMV New Guinea).
Sample:
SAMN30385649 • SRS14706769 • All experiments • All runs
Library:
Name: cMWMV isolate 249
Instrument: Illumina MiSeq
Strategy: OTHER
Source: GENOMIC
Selection: Hybrid Selection
Layout: PAIRED
Runs: 1 run, 533,200 spots, 120.4M bases, 42.3Mb
Run# of Spots# of BasesSizePublished
SRR21120614533,200120.4M42.3Mb2022-10-16

ID:
23934649

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