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SRX2026312: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Bredeney by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 2.1M spots, 781.4M bases, 479.5Mb downloads

External Id: EXT00208559
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: United Kingdom, Food and Environment Research Agency
PRJNA259925 • SRP048657 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Salmonella as part of a joint Fera, Food Standards Agency, US Food and Drug Administration project.
Sample:
SAMN03218284 • SRS1620725 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Bredeney
Library:
Name: Salmonella enterica subsp. enterica serovar Bredeney Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Bredeney.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 2.1M spots, 781.4M bases, 479.5Mb
Run# of Spots# of BasesSizePublished
SRR40350372,064,580781.4M479.5Mb2016-08-16

ID:
2925522

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