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SRX19136833: Strong isolation by distance and evidence of population microstructure reflect ongoing Plasmodium falciparum transmission in Zanzibar
1 ILLUMINA (NextSeq 500) run: 71,656 spots, 21.6M bases, 8.5Mb downloads

Design: Plasmodium falciparum loci collected across Zanzibar and in Bagamoyo District from 2016-2018 captured using molecular inversion probes and sequenced using Illumina NextSeq platform.
Submitted by: University of North Carolina Chapel Hill
Study: Strong isolation by distance and evidence of population microstructure reflect ongoing Plasmodium falciparum transmission in Zanzibar
PRJNA926345 • SRP418618 • All experiments • All runs
show Abstracthide Abstract
We used molecular inversion probes to characterize the genetic relatedness of 391 P. falciparum isolates collected across Zanzibar and in Bagamoyo District on the coastal mainland from 2016-2018. In addition, we included 147 samples from Ahero, Kenya to put the above samples in the context of the overall P. falciparum population structure in Africa.
Sample:
SAMN32869687 • SRS16548374 • All experiments • All runs
Organism: Plasmodium falciparum
Library:
Name: UNC-AH139
Instrument: NextSeq 500
Strategy: Targeted-Capture
Source: GENOMIC
Selection: padlock probes capture method
Layout: PAIRED
Runs: 1 run, 71,656 spots, 21.6M bases, 8.5Mb
Run# of Spots# of BasesSizePublished
SRR2318630471,65621.6M8.5Mb2023-01-22

ID:
26331664

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