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SRX19136419: Strong isolation by distance and evidence of population microstructure reflect ongoing Plasmodium falciparum transmission in Zanzibar
1 ILLUMINA (NextSeq 500) run: 42,887 spots, 13M bases, 5.2Mb downloads

Design: Plasmodium falciparum loci collected across Zanzibar and in Bagamoyo District from 2016-2018 captured using molecular inversion probes and sequenced using Illumina NextSeq platform.

Submitted by: University of North Carolina Chapel Hill

Study: Strong isolation by distance and evidence of population microstructure reflect ongoing Plasmodium falciparum transmission in Zanzibar

PRJNA926345 • SRP418618 • All experiments • All runs

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We used molecular inversion probes to characterize the genetic relatedness of 391 P. falciparum isolates collected across Zanzibar and in Bagamoyo District on the coastal mainland from 2016-2018. In addition, we included 147 samples from Ahero, Kenya to put the above samples in the context of the overall P. falciparum population structure in Africa.

Sample:

SAMN32869694 • SRS16547960 • All experiments • All runs

Organism: Plasmodium falciparum

Library:

Name: UNC-AH146

Instrument: NextSeq 500

Strategy: Targeted-Capture

Source: GENOMIC

Selection: padlock probes capture method

Layout: PAIRED

Runs: 1 run, 42,887 spots, 13M bases, 5.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR23186208	42,887	13M	5.2Mb	2023-01-22

ID:: 26331250

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