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SRX19373199: Whole genome sequencing of Arabidopsis arenosa
1 ILLUMINA (HiSeq X Ten) run: 75.4M spots, 22.8G bases, 8.7Gb downloads

Design: DNA extracted by CTAB protocol and library prepared Illumina TruSeq pcr free kit
Submitted by: Charles University Faculty of Science
Study: Whole genome re-sequencing of ploidy variable and outcrossing Arabidopsis species reveals trajectories of adaptation to whole genome duplication and alteration of selection efficiency between different cytotypes.
show Abstracthide Abstract
The project focused on naturally occurring populations of several Arabidopsis species with the main goal of understanding how whole-genome duplication modulates evolutionary trajectories. The first objective was to understand how species adapt to whole-genome duplication, as an event that leads to severe physiological constraints. The second objective was to understand whether whole-genome duplication also confers a systematic advantage, e.g. when polyploids accumulate more genetic variation due to polysomic masking, and whether this variation facilitates adaptation. The third objective was to understand the evolutionary history of the focal species A. arenosa, A. lyrata, A. halleri, A. croatica and A. cebennensis.
Sample: AAr-G
SAMN33010652 • SRS16769301 • All experiments • All runs
Library:
Name: SUB_07da
Instrument: HiSeq X Ten
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 75.4M spots, 22.8G bases, 8.7Gb
Run# of Spots# of BasesSizePublished
SRR2346933775,421,16822.8G8.7Gb2024-04-24

ID:
26637352

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